miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
211 3' -50.6 AC_000007.1 + 12894 0.68 0.704585
Target:  5'- aCCUGAGCCA---GGCUuucaAGAACUUGCa -3'
miRNA:   3'- aGGAUUUGGUcgaCCGG----UUUUGGACG- -5'
211 3' -50.6 AC_000007.1 + 12611 0.68 0.716162
Target:  5'- aCC-AGGCCGGCcucaucgGGCCGGAuggcCCUGUu -3'
miRNA:   3'- aGGaUUUGGUCGa------CCGGUUUu---GGACG- -5'
211 3' -50.6 AC_000007.1 + 12154 0.67 0.739011
Target:  5'- cCCUgGAGgCAGCUggGGCC-GGACCUGg -3'
miRNA:   3'- aGGA-UUUgGUCGA--CCGGuUUUGGACg -5'
211 3' -50.6 AC_000007.1 + 14240 0.67 0.772309
Target:  5'- cCCUGGACCcGCcguuUGuGCCuccgcgguACCUGCg -3'
miRNA:   3'- aGGAUUUGGuCG----AC-CGGuuu-----UGGACG- -5'
211 3' -50.6 AC_000007.1 + 21381 0.66 0.803064
Target:  5'- aUCCUGAGuuGuuauGCUGGUgAAgaauuccAACCUGCu -3'
miRNA:   3'- -AGGAUUUggU----CGACCGgUU-------UUGGACG- -5'
211 3' -50.6 AC_000007.1 + 13763 0.66 0.804095
Target:  5'- aCCUAAACaacucgcuGCUGcaGCCGcagcgcgaaaaGAACCUGCc -3'
miRNA:   3'- aGGAUUUGgu------CGAC--CGGU-----------UUUGGACG- -5'
211 3' -50.6 AC_000007.1 + 15169 0.66 0.81429
Target:  5'- gUCCUccACCGGCUGcauuGCCGcgGCUgccGCg -3'
miRNA:   3'- -AGGAuuUGGUCGAC----CGGUuuUGGa--CG- -5'
211 3' -50.6 AC_000007.1 + 2830 0.66 0.818306
Target:  5'- gCCUGGACCgauguaaggguucggGGCUGuGCCuuuuaCUGCu -3'
miRNA:   3'- aGGAUUUGG---------------UCGAC-CGGuuuugGACG- -5'
211 3' -50.6 AC_000007.1 + 32936 0.66 0.84349
Target:  5'- gUCCUuucuccCCGGCUGGCCuuAAaaaGCa -3'
miRNA:   3'- -AGGAuuu---GGUCGACCGGuuUUggaCG- -5'
211 3' -50.6 AC_000007.1 + 23130 0.66 0.84349
Target:  5'- ---aGAACCGGUggGGCCGAAAUgUGg -3'
miRNA:   3'- aggaUUUGGUCGa-CCGGUUUUGgACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.