miRNA: 3'- aacaCUGGCaa-CCCU---CCUCCU---------UCUCC- -5'
miRNA: 3'- aacaCUGGCAA-----CC-CUCCUCCuUCUCC- -5'
miRNA: 3'- aaCACUGGcaaccCUCCUCCUUCUCC- -5'
miRNA: 3'- -AACACUGGCAACCCUCCUCCUUCUCC- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21103 | 5' | -54.5 | NC_004761.1 | + | 3619 | 0.66 | 0.2121 |
|
Target: 5'- ---aGACCGacgGGGAccuGGAGGAccuggauagGGAGGu -3' miRNA: 3'- aacaCUGGCaa-CCCU---CCUCCU---------UCUCC- -5' |
|||||||
| 21103 | 5' | -54.5 | NC_004761.1 | + | 3893 | 0.71 | 0.094507 |
|
Target: 5'- ---aGACCGUUuugagGGuGGGGAGGuGGAGGa -3' miRNA: 3'- aacaCUGGCAA-----CC-CUCCUCCuUCUCC- -5' |
|||||||
| 21103 | 5' | -54.5 | NC_004761.1 | + | 2694 | 0.75 | 0.037812 |
|
Target: 5'- -aGUGACCaagaaGAGGAGGAGGAGGg -3' miRNA: 3'- aaCACUGGcaaccCUCCUCCUUCUCC- -5' |
|||||||
| 21103 | 5' | -54.5 | NC_004761.1 | + | 3780 | 1.08 | 8.1e-05 |
|
Target: 5'- gUUGUGACCGUUGGGAGGAGGAAGAGGu -3' miRNA: 3'- -AACACUGGCAACCCUCCUCCUUCUCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home