miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21103 5' -54.5 NC_004761.1 + 3780 1.08 8.1e-05
Target:  5'- gUUGUGACCGUUGGGAGGAGGAAGAGGu -3'
miRNA:   3'- -AACACUGGCAACCCUCCUCCUUCUCC- -5'
21103 5' -54.5 NC_004761.1 + 2694 0.75 0.037812
Target:  5'- -aGUGACCaagaaGAGGAGGAGGAGGg -3'
miRNA:   3'- aaCACUGGcaaccCUCCUCCUUCUCC- -5'
21103 5' -54.5 NC_004761.1 + 3893 0.71 0.094507
Target:  5'- ---aGACCGUUuugagGGuGGGGAGGuGGAGGa -3'
miRNA:   3'- aacaCUGGCAA-----CC-CUCCUCCuUCUCC- -5'
21103 5' -54.5 NC_004761.1 + 3619 0.66 0.2121
Target:  5'- ---aGACCGacgGGGAccuGGAGGAccuggauagGGAGGu -3'
miRNA:   3'- aacaCUGGCaa-CCCU---CCUCCU---------UCUCC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.