miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21125 5' -52 NC_004775.1 + 19351 0.67 0.713973
Target:  5'- uGCCGuagUCGuGGUugCUGGUACUGCg-- -3'
miRNA:   3'- cUGGC---AGC-UUAugGGCCAUGACGaau -5'
21125 5' -52 NC_004775.1 + 14282 0.67 0.713973
Target:  5'- uGAUCGUCGAAUGCUCGcuuCaGCUUAu -3'
miRNA:   3'- -CUGGCAGCUUAUGGGCcauGaCGAAU- -5'
21125 5' -52 NC_004775.1 + 7211 0.68 0.656635
Target:  5'- uGACCGUUGggUACaaaacgCCGGUcaucacGCUGCc-- -3'
miRNA:   3'- -CUGGCAGCuuAUG------GGCCA------UGACGaau -5'
21125 5' -52 NC_004775.1 + 15408 1.07 0.00182
Target:  5'- uGACCGUCGAAUACCCGGUACUGCUUAg -3'
miRNA:   3'- -CUGGCAGCUUAUGGGCCAUGACGAAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.