Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21132 | 3' | -54.6 | NC_004775.1 | + | 5674 | 0.66 | 0.654054 |
|
Target: 5'- gUGGGCUGCUgACGuuaaagcagacaaaGAgauaGGCGGCGAcaaGCu -3' miRNA: 3'- -ACUCGACGAgUGC--------------CUa---CCGUUGCU---CG- -5' |
|||||||
| 21132 | 3' | -54.6 | NC_004775.1 | + | 34998 | 0.66 | 0.646078 |
|
Target: 5'- gGGGCUGCcgCGCGccUGG-GACGAGUc -3' miRNA: 3'- aCUCGACGa-GUGCcuACCgUUGCUCG- -5' |
|||||||
| 21132 | 3' | -54.6 | NC_004775.1 | + | 34464 | 0.67 | 0.544207 |
|
Target: 5'- aGAGCgaGCUUACuGGGUGGCccACGccaguAGCa -3' miRNA: 3'- aCUCGa-CGAGUG-CCUACCGu-UGC-----UCG- -5' |
|||||||
| 21132 | 3' | -54.6 | NC_004775.1 | + | 30655 | 0.67 | 0.544207 |
|
Target: 5'- cUGAGaUGCUCAggaucugccCGGA--GCGGCGGGCa -3' miRNA: 3'- -ACUCgACGAGU---------GCCUacCGUUGCUCG- -5' |
|||||||
| 21132 | 3' | -54.6 | NC_004775.1 | + | 26461 | 1.12 | 0.000446 |
|
Target: 5'- cUGAGCUGCUCACGGAUGGCAACGAGCu -3' miRNA: 3'- -ACUCGACGAGUGCCUACCGUUGCUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home