miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21138 5' -55.7 NC_004775.1 + 17980 0.66 0.580326
Target:  5'- aCACGUGACggcaUGCGCUuGUCuGCAaauACCa -3'
miRNA:   3'- -GUGUACUG----GCGCGGuCAGuCGU---UGGa -5'
21138 5' -55.7 NC_004775.1 + 34104 0.66 0.580326
Target:  5'- gAUAUGACCGCcgGCgaucaGGUUAcGCAGCCa -3'
miRNA:   3'- gUGUACUGGCG--CGg----UCAGU-CGUUGGa -5'
21138 5' -55.7 NC_004775.1 + 26075 0.66 0.576955
Target:  5'- uGCGUGACgCGCaCCAGgucgccgguguacuUCAuGCAGCCUu -3'
miRNA:   3'- gUGUACUG-GCGcGGUC--------------AGU-CGUUGGA- -5'
21138 5' -55.7 NC_004775.1 + 32876 0.66 0.557942
Target:  5'- --uGUGGCCGgGCCAauGcCAGCAGCa- -3'
miRNA:   3'- gugUACUGGCgCGGU--CaGUCGUUGga -5'
21138 5' -55.7 NC_004775.1 + 31574 0.66 0.557942
Target:  5'- uGCAUGGCCuGCGCCGuGUaauGC-ACCg -3'
miRNA:   3'- gUGUACUGG-CGCGGU-CAgu-CGuUGGa -5'
21138 5' -55.7 NC_004775.1 + 10635 0.67 0.513991
Target:  5'- gCAgAUGGCC-CGCCAGacuuUCAGCGGgCUu -3'
miRNA:   3'- -GUgUACUGGcGCGGUC----AGUCGUUgGA- -5'
21138 5' -55.7 NC_004775.1 + 5109 0.67 0.513991
Target:  5'- aCACAUGACCuuuCuCCAG-CAGUGACCa -3'
miRNA:   3'- -GUGUACUGGc--GcGGUCaGUCGUUGGa -5'
21138 5' -55.7 NC_004775.1 + 18676 0.67 0.492545
Target:  5'- -uCGUGACUGCGCUGGUCAuCucACCa -3'
miRNA:   3'- guGUACUGGCGCGGUCAGUcGu-UGGa -5'
21138 5' -55.7 NC_004775.1 + 14974 0.68 0.47152
Target:  5'- aUACGUGaaGCCGgaUGCCGGUagccagggcaCAGCAGCCg -3'
miRNA:   3'- -GUGUAC--UGGC--GCGGUCA----------GUCGUUGGa -5'
21138 5' -55.7 NC_004775.1 + 38685 0.7 0.356217
Target:  5'- uUACAaGGCUGCGCUGG-CAGCAGCa- -3'
miRNA:   3'- -GUGUaCUGGCGCGGUCaGUCGUUGga -5'
21138 5' -55.7 NC_004775.1 + 38718 1.07 0.000741
Target:  5'- cCACAUGACCGCGCCAGUCAGCAACCUc -3'
miRNA:   3'- -GUGUACUGGCGCGGUCAGUCGUUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.