miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21139 5' -53 NC_004775.1 + 17534 0.66 0.783412
Target:  5'- cGGUG-GCcuucguuucaaaGAUCGCCUCCAGuGCCUg -3'
miRNA:   3'- uCUAUgCG------------CUAGUGGAGGUCuUGGGg -5'
21139 5' -53 NC_004775.1 + 13300 0.66 0.770991
Target:  5'- gGGAaACGCGGcauuugacgcugCAUCUCCuGAGgCCCa -3'
miRNA:   3'- -UCUaUGCGCUa-----------GUGGAGGuCUUgGGG- -5'
21139 5' -53 NC_004775.1 + 26265 0.66 0.762586
Target:  5'- -cAUACuGuCGAUCGCCgugaacauUCCAGGcaaccACCCCg -3'
miRNA:   3'- ucUAUG-C-GCUAGUGG--------AGGUCU-----UGGGG- -5'
21139 5' -53 NC_004775.1 + 7065 0.66 0.751952
Target:  5'- uGAUAcCGCGGUgGCCguaauggCCuGAGCCgCg -3'
miRNA:   3'- uCUAU-GCGCUAgUGGa------GGuCUUGGgG- -5'
21139 5' -53 NC_004775.1 + 12041 0.67 0.697079
Target:  5'- uGGA-ACGUGGUCACCauucacCCAGAguaaagcgGCUCCa -3'
miRNA:   3'- -UCUaUGCGCUAGUGGa-----GGUCU--------UGGGG- -5'
21139 5' -53 NC_004775.1 + 16788 0.67 0.685853
Target:  5'- cAGA-ACGCGAUCGCCaUCagcaggguuaCAGAuACCCUu -3'
miRNA:   3'- -UCUaUGCGCUAGUGG-AG----------GUCU-UGGGG- -5'
21139 5' -53 NC_004775.1 + 31852 0.67 0.685853
Target:  5'- -aAUACGCGGUUggACCuugUCCAGGuaaACCUCa -3'
miRNA:   3'- ucUAUGCGCUAG--UGG---AGGUCU---UGGGG- -5'
21139 5' -53 NC_004775.1 + 1002 0.68 0.666647
Target:  5'- -uGUugGCGGUCACCaccaccuugcaguccUCgCAGGuggacauGCCCCa -3'
miRNA:   3'- ucUAugCGCUAGUGG---------------AG-GUCU-------UGGGG- -5'
21139 5' -53 NC_004775.1 + 31495 0.68 0.656436
Target:  5'- ---aACGCGAuaaauacggaaaucgUCACCUCCgaucAGGACgCCg -3'
miRNA:   3'- ucuaUGCGCU---------------AGUGGAGG----UCUUGgGG- -5'
21139 5' -53 NC_004775.1 + 12438 0.7 0.550097
Target:  5'- cAGAU-UGCGAUgaCACUUCCGGAagguGCCCg -3'
miRNA:   3'- -UCUAuGCGCUA--GUGGAGGUCU----UGGGg -5'
21139 5' -53 NC_004775.1 + 805 1.13 0.000609
Target:  5'- gAGAUACGCGAUCACCUCCAGAACCCCg -3'
miRNA:   3'- -UCUAUGCGCUAGUGGAGGUCUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.