miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21141	5'	-56.4	NC_004775.1	+	28034	0.66	0.540399
	Target:  5'- uGC-CAGGcAGCGCGccuacauguUGCAgCAGUGGg -3' miRNA:   3'- cCGcGUCCaUCGCGU---------ACGUgGUCACU- -5'
21141	5'	-56.4	NC_004775.1	+	30017	0.68	0.425767
	Target:  5'- -uUGCAGGUguGGCGCcgugGCGCCAcgGUGGu -3' miRNA:   3'- ccGCGUCCA--UCGCGua--CGUGGU--CACU- -5'
21141	5'	-56.4	NC_004775.1	+	747	0.68	0.425767
	Target:  5'- uGGCaCAGaGcUGGCGCAUGCcACCGGg-- -3' miRNA:   3'- -CCGcGUC-C-AUCGCGUACG-UGGUCacu -5'
21141	5'	-56.4	NC_004775.1	+	39266	0.69	0.369634
	Target:  5'- aGCGCAGcGU-GCGCGgcaguacGcCGCCGGUGAg -3' miRNA:   3'- cCGCGUC-CAuCGCGUa------C-GUGGUCACU- -5'
21141	5'	-56.4	NC_004775.1	+	8492	0.69	0.361661
	Target:  5'- uGGCGCugacuGGUAGCGCAgaucucgguaacaaUGCACUGacgauguacaaccguGUGAu -3' miRNA:   3'- -CCGCGu----CCAUCGCGU--------------ACGUGGU---------------CACU- -5'
21141	5'	-56.4	NC_004775.1	+	35837	0.74	0.177539
	Target:  5'- cGGCGCA-GUAGCGCAUuuuuuuaCAuCCAGUGAa -3' miRNA:   3'- -CCGCGUcCAUCGCGUAc------GU-GGUCACU- -5'
21141	5'	-56.4	NC_004775.1	+	1525	1.11	0.000311
	Target:  5'- cGGCGCAGGUAGCGCAUGCACCAGUGAu -3' miRNA:   3'- -CCGCGUCCAUCGCGUACGUGGUCACU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home