miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21142 3' -54.3 NC_004775.1 + 37769 0.66 0.634672
Target:  5'- --cUGAUG-UAGGCAggaAUCAGCCUGg -3'
miRNA:   3'- cguACUACaGUCCGUag-UGGUCGGGC- -5'
21142 3' -54.3 NC_004775.1 + 16077 0.66 0.634672
Target:  5'- gGCGgcuaugGAUG--AGGCAuaUCGCCAGCUCa -3'
miRNA:   3'- -CGUa-----CUACagUCCGU--AGUGGUCGGGc -5'
21142 3' -54.3 NC_004775.1 + 34637 0.67 0.623264
Target:  5'- cGguUGA-GUCGuucgccacuGGUGUCuGCCAGCCCGu -3'
miRNA:   3'- -CguACUaCAGU---------CCGUAG-UGGUCGGGC- -5'
21142 3' -54.3 NC_004775.1 + 31973 0.67 0.611865
Target:  5'- gGCAgUGAUGUCGccGGUAUUcucgggAUUAGCCCGu -3'
miRNA:   3'- -CGU-ACUACAGU--CCGUAG------UGGUCGGGC- -5'
21142 3' -54.3 NC_004775.1 + 33173 0.68 0.555348
Target:  5'- -gGUGGUG-CAcuGGCAUCAaaaauaUCGGCCCGa -3'
miRNA:   3'- cgUACUACaGU--CCGUAGU------GGUCGGGC- -5'
21142 3' -54.3 NC_004775.1 + 4579 0.68 0.508003
Target:  5'- -uGUGAUGgcUCAGGCucAgaaaucuaucggccUCACCAGCCUGu -3'
miRNA:   3'- cgUACUAC--AGUCCG--U--------------AGUGGUCGGGC- -5'
21142 3' -54.3 NC_004775.1 + 28766 0.7 0.418159
Target:  5'- cGgAUGAUGUCAGGCuugCGCgAGUUCu -3'
miRNA:   3'- -CgUACUACAGUCCGua-GUGgUCGGGc -5'
21142 3' -54.3 NC_004775.1 + 9013 0.71 0.362122
Target:  5'- ----aGUGUCAgcauacGGCAUCGCCAGCUCa -3'
miRNA:   3'- cguacUACAGU------CCGUAGUGGUCGGGc -5'
21142 3' -54.3 NC_004775.1 + 3573 0.75 0.214791
Target:  5'- uCAUGucaggGUCAGGCGUUGCCAGUuuGa -3'
miRNA:   3'- cGUACua---CAGUCCGUAGUGGUCGggC- -5'
21142 3' -54.3 NC_004775.1 + 9541 0.79 0.121946
Target:  5'- gGCAguUGcUGUCAGGcCAUCGCCAGCCa- -3'
miRNA:   3'- -CGU--ACuACAGUCC-GUAGUGGUCGGgc -5'
21142 3' -54.3 NC_004775.1 + 3465 1.12 0.000489
Target:  5'- gGCAUGAUGUCAGGCAUCACCAGCCCGg -3'
miRNA:   3'- -CGUACUACAGUCCGUAGUGGUCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.