miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21145 3' -52 NC_004775.1 + 3771 0.66 0.803577
Target:  5'- cGCCAGuuCuCCAuGACCGUucGCCAGaUGGu -3'
miRNA:   3'- -UGGUUuuG-GGU-CUGGCA--UGGUC-ACUg -5'
21145 3' -52 NC_004775.1 + 6581 0.66 0.783048
Target:  5'- gGCCAGu-UCC-GugCGUACC-GUGACg -3'
miRNA:   3'- -UGGUUuuGGGuCugGCAUGGuCACUG- -5'
21145 3' -52 NC_004775.1 + 4840 0.66 0.783048
Target:  5'- aGCCAAGACUcuCAGcgaaaCGcagACCAGUGACc -3'
miRNA:   3'- -UGGUUUUGG--GUCug---GCa--UGGUCACUG- -5'
21145 3' -52 NC_004775.1 + 912 0.67 0.728916
Target:  5'- gGCCGGAugCgCGGGCCagcaucagcgGCUGGUGACg -3'
miRNA:   3'- -UGGUUUugG-GUCUGGca--------UGGUCACUG- -5'
21145 3' -52 NC_004775.1 + 765 0.67 0.706419
Target:  5'- uGCCAccGGGCCCAGAaaGUGgCAGgcUGAUg -3'
miRNA:   3'- -UGGU--UUUGGGUCUggCAUgGUC--ACUG- -5'
21145 3' -52 NC_004775.1 + 38649 0.69 0.625812
Target:  5'- cACCAuuACCCAGucauCCGgcacUACCGGcgcUGGCg -3'
miRNA:   3'- -UGGUuuUGGGUCu---GGC----AUGGUC---ACUG- -5'
21145 3' -52 NC_004775.1 + 35737 0.69 0.614226
Target:  5'- uACgAAGAugUCCAGuuaaACCaGUACCAGUGGCa -3'
miRNA:   3'- -UGgUUUU--GGGUC----UGG-CAUGGUCACUG- -5'
21145 3' -52 NC_004775.1 + 10491 0.69 0.591117
Target:  5'- uACCGGAACagauCCAGACaccaaCGaACCGGUGGCu -3'
miRNA:   3'- -UGGUUUUG----GGUCUG-----GCaUGGUCACUG- -5'
21145 3' -52 NC_004775.1 + 7351 0.71 0.468658
Target:  5'- uGCCAGuGgUCGGcGCgGUACCGGUGACg -3'
miRNA:   3'- -UGGUUuUgGGUC-UGgCAUGGUCACUG- -5'
21145 3' -52 NC_004775.1 + 3696 0.72 0.417351
Target:  5'- uGCCGAAaguACCCAGGCuugCGUACauuacaggCAGUGACu -3'
miRNA:   3'- -UGGUUU---UGGGUCUG---GCAUG--------GUCACUG- -5'
21145 3' -52 NC_004775.1 + 6267 0.77 0.229608
Target:  5'- -aCGAAGCCCAGAUCGUacaacauACCGGUGGu -3'
miRNA:   3'- ugGUUUUGGGUCUGGCA-------UGGUCACUg -5'
21145 3' -52 NC_004775.1 + 6166 1.09 0.001399
Target:  5'- aACCAAAACCCAGACCGUACCAGUGACc -3'
miRNA:   3'- -UGGUUUUGGGUCUGGCAUGGUCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.