miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21146 5' -54.1 NC_004775.1 + 27212 0.66 0.635421
Target:  5'- uCACGUUUAGCcgcaGCUGGCGAguGGCCuGCc -3'
miRNA:   3'- uGUGCGAAUCG----UGGUCGUU--UCGG-CGu -5'
21146 5' -54.1 NC_004775.1 + 25144 0.66 0.635421
Target:  5'- gACACGaac-GCGCCAGCAGAGaaGaCGa -3'
miRNA:   3'- -UGUGCgaauCGUGGUCGUUUCggC-GU- -5'
21146 5' -54.1 NC_004775.1 + 5011 0.66 0.623821
Target:  5'- uCAUGgaUAGCG--AGCAGGGCCGCc -3'
miRNA:   3'- uGUGCgaAUCGUggUCGUUUCGGCGu -5'
21146 5' -54.1 NC_004775.1 + 28636 0.66 0.612229
Target:  5'- cGCACaGCcUGGCAgCAGUucaaccGCCGCAc -3'
miRNA:   3'- -UGUG-CGaAUCGUgGUCGuuu---CGGCGU- -5'
21146 5' -54.1 NC_004775.1 + 15160 0.66 0.600656
Target:  5'- gGCGCGUaaucUGGCAacgCAGCAGAGCCu-- -3'
miRNA:   3'- -UGUGCGa---AUCGUg--GUCGUUUCGGcgu -5'
21146 5' -54.1 NC_004775.1 + 4779 0.66 0.5995
Target:  5'- aGCGCGCgaaacaGGCACaagccgcgcaGGCAAuggcaauggggcaGGCCGCAg -3'
miRNA:   3'- -UGUGCGaa----UCGUGg---------UCGUU-------------UCGGCGU- -5'
21146 5' -54.1 NC_004775.1 + 12971 0.67 0.589113
Target:  5'- -aACGCagAGCA-CGGCAuucgugcgcuGGGCCGCAa -3'
miRNA:   3'- ugUGCGaaUCGUgGUCGU----------UUCGGCGU- -5'
21146 5' -54.1 NC_004775.1 + 30146 0.67 0.566157
Target:  5'- gGCACGCUUAaacauCGCCuuGGCAucuGCUGCGg -3'
miRNA:   3'- -UGUGCGAAUc----GUGG--UCGUuu-CGGCGU- -5'
21146 5' -54.1 NC_004775.1 + 8244 0.67 0.543438
Target:  5'- cACGCGCUUGGUAgcaaaguuCCAGuCGAAGUCaGCc -3'
miRNA:   3'- -UGUGCGAAUCGU--------GGUC-GUUUCGG-CGu -5'
21146 5' -54.1 NC_004775.1 + 37724 0.68 0.498985
Target:  5'- cACGCGC-UGGCAUUGGCGugAAGCaGCAg -3'
miRNA:   3'- -UGUGCGaAUCGUGGUCGU--UUCGgCGU- -5'
21146 5' -54.1 NC_004775.1 + 1978 0.68 0.488119
Target:  5'- -aGCGCUUAGgccgcuCGCCGGCAAGGgugaCGCGc -3'
miRNA:   3'- ugUGCGAAUC------GUGGUCGUUUCg---GCGU- -5'
21146 5' -54.1 NC_004775.1 + 3139 0.68 0.477367
Target:  5'- cGC-CGCcguGCAgCAGC-AGGCCGCAg -3'
miRNA:   3'- -UGuGCGaauCGUgGUCGuUUCGGCGU- -5'
21146 5' -54.1 NC_004775.1 + 17904 0.69 0.466733
Target:  5'- cCAUGCUgGGCACCAGCGuacuGaCgGCAa -3'
miRNA:   3'- uGUGCGAaUCGUGGUCGUuu--C-GgCGU- -5'
21146 5' -54.1 NC_004775.1 + 11655 0.69 0.445841
Target:  5'- -aGCGacacUGGCGCCAGCGAgagcgauagccgGGCUGCAc -3'
miRNA:   3'- ugUGCga--AUCGUGGUCGUU------------UCGGCGU- -5'
21146 5' -54.1 NC_004775.1 + 34285 0.7 0.376176
Target:  5'- cCGCGCUgaaaggcUGGCACgGGCAgGAGCCGg- -3'
miRNA:   3'- uGUGCGA-------AUCGUGgUCGU-UUCGGCgu -5'
21146 5' -54.1 NC_004775.1 + 8059 0.75 0.204831
Target:  5'- cGCGCGCUgAGCAacaUCGGCAAcAGUCGCAg -3'
miRNA:   3'- -UGUGCGAaUCGU---GGUCGUU-UCGGCGU- -5'
21146 5' -54.1 NC_004775.1 + 6389 1.09 0.000692
Target:  5'- aACACGCUUAGCACCAGCAAAGCCGCAa -3'
miRNA:   3'- -UGUGCGAAUCGUGGUCGUUUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.