miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21153 5' -53.7 NC_004775.1 + 13197 0.66 0.715699
Target:  5'- -aACaUGAgaaCGGCAGCCagccguacAGCGAUCAGcaGCu -3'
miRNA:   3'- caUG-ACU---GCCGUUGG--------UCGCUAGUC--CG- -5'
21153 5' -53.7 NC_004775.1 + 3430 0.66 0.704527
Target:  5'- cUACUGGCucaauGGCucagcgcauucuguCCAGCGGcaugaugUCAGGCa -3'
miRNA:   3'- cAUGACUG-----CCGuu------------GGUCGCU-------AGUCCG- -5'
21153 5' -53.7 NC_004775.1 + 4605 0.66 0.692151
Target:  5'- aUACgcaGCGGCAuACCcugaagaacgucuGGCGGUuCAGGCa -3'
miRNA:   3'- cAUGac-UGCCGU-UGG-------------UCGCUA-GUCCG- -5'
21153 5' -53.7 NC_004775.1 + 7367 0.66 0.681967
Target:  5'- aUGCcaGCGGUuacuuuGCCAGUGGUCGGcGCg -3'
miRNA:   3'- cAUGacUGCCGu-----UGGUCGCUAGUC-CG- -5'
21153 5' -53.7 NC_004775.1 + 16848 0.66 0.670604
Target:  5'- cUGCUGAUGGCGAUC-GCGuUCuGaGCu -3'
miRNA:   3'- cAUGACUGCCGUUGGuCGCuAGuC-CG- -5'
21153 5' -53.7 NC_004775.1 + 4224 0.67 0.636326
Target:  5'- cGUACcucGAC-GUAAUUAGCGGUCAGGa -3'
miRNA:   3'- -CAUGa--CUGcCGUUGGUCGCUAGUCCg -5'
21153 5' -53.7 NC_004775.1 + 1867 0.67 0.624877
Target:  5'- -aGCUcGGCGGCGcGCUGGaUGAUCAGGa -3'
miRNA:   3'- caUGA-CUGCCGU-UGGUC-GCUAGUCCg -5'
21153 5' -53.7 NC_004775.1 + 5314 0.67 0.602009
Target:  5'- -aACUGGugauaaucCGGCAcccGCUGGCGAUcCGGGUa -3'
miRNA:   3'- caUGACU--------GCCGU---UGGUCGCUA-GUCCG- -5'
21153 5' -53.7 NC_004775.1 + 16291 0.68 0.590613
Target:  5'- aGUGCauucACGGCAgcagacgaaACUGGUGGUCAGGUc -3'
miRNA:   3'- -CAUGac--UGCCGU---------UGGUCGCUAGUCCG- -5'
21153 5' -53.7 NC_004775.1 + 30902 0.68 0.579253
Target:  5'- aGUGgUGGCgaugcgcgccaGGCggUCAGCGGUCAuGGUu -3'
miRNA:   3'- -CAUgACUG-----------CCGuuGGUCGCUAGU-CCG- -5'
21153 5' -53.7 NC_004775.1 + 27373 0.68 0.567941
Target:  5'- cGUGgUGGCcgGGCua-CAGCGGUgCAGGCc -3'
miRNA:   3'- -CAUgACUG--CCGuugGUCGCUA-GUCCG- -5'
21153 5' -53.7 NC_004775.1 + 31398 0.69 0.490796
Target:  5'- uUACUGuugUGGCcuCCGGCGGguUCAGGUu -3'
miRNA:   3'- cAUGACu--GCCGuuGGUCGCU--AGUCCG- -5'
21153 5' -53.7 NC_004775.1 + 9174 0.7 0.448935
Target:  5'- -cACUGACGGCAAgcucugcaauauUCGGCGcugagCAGGUc -3'
miRNA:   3'- caUGACUGCCGUU------------GGUCGCua---GUCCG- -5'
21153 5' -53.7 NC_004775.1 + 34112 0.72 0.353718
Target:  5'- --cCUGGC-GCGauaugaccGCCGGCGAUCAGGUu -3'
miRNA:   3'- cauGACUGcCGU--------UGGUCGCUAGUCCG- -5'
21153 5' -53.7 NC_004775.1 + 17920 1.11 0.000613
Target:  5'- cGUACUGACGGCAACCAGCGAUCAGGCc -3'
miRNA:   3'- -CAUGACUGCCGUUGGUCGCUAGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.