miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21154 5' -58.5 NC_004775.1 + 12985 0.66 0.464246
Target:  5'- aUCACCGGUCUGG---CCUAC-CCaCGg -3'
miRNA:   3'- -GGUGGCCAGACCuguGGAUGcGG-GCg -5'
21154 5' -58.5 NC_004775.1 + 16405 0.67 0.458339
Target:  5'- aCCAauCCGGaUCUGacaauuacgcaucccGACACCggGCaGCCUGCg -3'
miRNA:   3'- -GGU--GGCC-AGAC---------------CUGUGGa-UG-CGGGCG- -5'
21154 5' -58.5 NC_004775.1 + 24928 0.67 0.444715
Target:  5'- gCCACCucuGGag-GGACuCCUGCGauaaCCGCa -3'
miRNA:   3'- -GGUGG---CCagaCCUGuGGAUGCg---GGCG- -5'
21154 5' -58.5 NC_004775.1 + 29145 0.69 0.314548
Target:  5'- --uCCGGUaaugaacgugCUGGAUAUCUGcCGCCUGCc -3'
miRNA:   3'- gguGGCCA----------GACCUGUGGAU-GCGGGCG- -5'
21154 5' -58.5 NC_004775.1 + 34985 0.71 0.251361
Target:  5'- cCCGCUGGUUgaugGGGCugCcgcGCGCCUGg -3'
miRNA:   3'- -GGUGGCCAGa---CCUGugGa--UGCGGGCg -5'
21154 5' -58.5 NC_004775.1 + 34144 0.71 0.238822
Target:  5'- uUCGCCGGaauuggcgUCUGGucuCAuucCCUGCGCCuCGCc -3'
miRNA:   3'- -GGUGGCC--------AGACCu--GU---GGAUGCGG-GCG- -5'
21154 5' -58.5 NC_004775.1 + 5797 0.74 0.160709
Target:  5'- -aACCGGUCUGGGgaauCACCcgGCGCuuGUu -3'
miRNA:   3'- ggUGGCCAGACCU----GUGGa-UGCGggCG- -5'
21154 5' -58.5 NC_004775.1 + 5525 0.75 0.13648
Target:  5'- aCUGCCGcUCUGGAgcaguucgaGCCUAuCGCCCGCg -3'
miRNA:   3'- -GGUGGCcAGACCUg--------UGGAU-GCGGGCG- -5'
21154 5' -58.5 NC_004775.1 + 26115 0.75 0.132784
Target:  5'- gCGCCGGUCgucGAUACCguucUGCCCGCc -3'
miRNA:   3'- gGUGGCCAGac-CUGUGGau--GCGGGCG- -5'
21154 5' -58.5 NC_004775.1 + 18640 1.13 0.000185
Target:  5'- gCCACCGGUCUGGACACCUACGCCCGCg -3'
miRNA:   3'- -GGUGGCCAGACCUGUGGAUGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.