miRNA: 3'- guCCGUCA------UAUUGCGGUAacAGCCGc -5'
miRNA: 3'- -GUCCGuCAUau---------UGCGG-----UAACAGCCGC- -5'
miRNA: 3'- gUCCGUCa-UAU---------UGCGGUaacAGCCGC- -5'
miRNA: 3'- guCCGUCauauuGCGGUAa--CAGCCGc -5'
miRNA: 3'- -GUCCGUCAUAUUGCGGUAACAGCCGC- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21155 | 3' | -51.6 | NC_004775.1 | + | 14430 | 0.66 | 0.828352 |
|
Target: 5'- -uGGCGGUgaugugGUAAUGCCAU--UUGGCa -3' miRNA: 3'- guCCGUCA------UAUUGCGGUAacAGCCGc -5' |
|||||||
| 21155 | 3' | -51.6 | NC_004775.1 | + | 14338 | 0.66 | 0.816726 |
|
Target: 5'- aCAGGUuGUAgcuuagcuggcGCGCCuggggGUUGUUGGCGa -3' miRNA: 3'- -GUCCGuCAUau---------UGCGG-----UAACAGCCGC- -5' |
|||||||
| 21155 | 3' | -51.6 | NC_004775.1 | + | 37179 | 0.67 | 0.777958 |
|
Target: 5'- uGGGCGGcgAUAccuucgagaACGCCA---UCGGCGa -3' miRNA: 3'- gUCCGUCa-UAU---------UGCGGUaacAGCCGC- -5' |
|||||||
| 21155 | 3' | -51.6 | NC_004775.1 | + | 648 | 0.71 | 0.495058 |
|
Target: 5'- -cGGCGGgccuuCGCCAUucgGUCGGCa -3' miRNA: 3'- guCCGUCauauuGCGGUAa--CAGCCGc -5' |
|||||||
| 21155 | 3' | -51.6 | NC_004775.1 | + | 26419 | 1.08 | 0.001746 |
|
Target: 5'- uCAGGCAGUAUAACGCCAUUGUCGGCGc -3' miRNA: 3'- -GUCCGUCAUAUUGCGGUAACAGCCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home