Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21160 | 5' | -52.7 | NC_004775.1 | + | 35440 | 0.67 | 0.677678 |
|
Target: 5'- aAGCGUCgUGCA-CAGGAcGCaGACAGGAa -3' miRNA: 3'- -UCGCAG-GCGUaGUCUU-CGcCUGUUUU- -5' |
|||||||
| 21160 | 5' | -52.7 | NC_004775.1 | + | 39161 | 0.68 | 0.6078 |
|
Target: 5'- aAGCGUCUgauaguugaGCGggAGAAGCGG-CAGAAa -3' miRNA: 3'- -UCGCAGG---------CGUagUCUUCGCCuGUUUU- -5' |
|||||||
| 21160 | 5' | -52.7 | NC_004775.1 | + | 32159 | 0.7 | 0.505165 |
|
Target: 5'- uGGCGUUCGCcgUgaaauucuGGAAGCGG-CAAAAg -3' miRNA: 3'- -UCGCAGGCGuaG--------UCUUCGCCuGUUUU- -5' |
|||||||
| 21160 | 5' | -52.7 | NC_004775.1 | + | 26026 | 0.71 | 0.410693 |
|
Target: 5'- cGCGUCaCGCAgaUCAuaaauGGCGGGCAGAAc -3' miRNA: 3'- uCGCAG-GCGU--AGUcu---UCGCCUGUUUU- -5' |
|||||||
| 21160 | 5' | -52.7 | NC_004775.1 | + | 35204 | 0.86 | 0.040942 |
|
Target: 5'- uGGCGUCCGCAUUgaAAGCGGACAGAu -3' miRNA: 3'- -UCGCAGGCGUAGucUUCGCCUGUUUu -5' |
|||||||
| 21160 | 5' | -52.7 | NC_004775.1 | + | 35483 | 1.07 | 0.001448 |
|
Target: 5'- aAGCGUCCGCAUCAGAAGCGGACAAAAa -3' miRNA: 3'- -UCGCAGGCGUAGUCUUCGCCUGUUUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home