Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21167 | 5' | -44.4 | NC_004777.1 | + | 9243 | 0.67 | 0.992089 |
Target: 5'- --cCAACGcuuAAGGuCGAACGAuGGGCa -3' miRNA: 3'- caaGUUGUac-UUCC-GUUUGCUuUCCG- -5' |
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21167 | 5' | -44.4 | NC_004777.1 | + | 10261 | 0.74 | 0.823806 |
Target: 5'- uGUUCGAUAUGGacgaagcuggacgcaAGGCAGuCGaAGAGGCc -3' miRNA: 3'- -CAAGUUGUACU---------------UCCGUUuGC-UUUCCG- -5' |
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21167 | 5' | -44.4 | NC_004777.1 | + | 11439 | 0.67 | 0.987434 |
Target: 5'- --aCAACGUGGAaGCAAaacgucugaACGAuGAGGCu -3' miRNA: 3'- caaGUUGUACUUcCGUU---------UGCU-UUCCG- -5' |
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21167 | 5' | -44.4 | NC_004777.1 | + | 12769 | 0.66 | 0.993291 |
Target: 5'- ---aGGCGUGGgguuaucgcuuAGGCgAGAUGAAGGGUg -3' miRNA: 3'- caagUUGUACU-----------UCCG-UUUGCUUUCCG- -5' |
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21167 | 5' | -44.4 | NC_004777.1 | + | 15123 | 0.77 | 0.66986 |
Target: 5'- -aUCAACugAUGGAGGCuGACGAAuacguGGCu -3' miRNA: 3'- caAGUUG--UACUUCCGuUUGCUUu----CCG- -5' |
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21167 | 5' | -44.4 | NC_004777.1 | + | 15205 | 0.7 | 0.946492 |
Target: 5'- aGUU--ACGUGAAGGauguAACGAcaAAGGCa -3' miRNA: 3'- -CAAguUGUACUUCCgu--UUGCU--UUCCG- -5' |
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21167 | 5' | -44.4 | NC_004777.1 | + | 17154 | 0.67 | 0.989174 |
Target: 5'- ---aAGCAUGAAGGCGAgacaauGCGuguauacuuuaaGGAGGUa -3' miRNA: 3'- caagUUGUACUUCCGUU------UGC------------UUUCCG- -5' |
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21167 | 5' | -44.4 | NC_004777.1 | + | 18928 | 0.69 | 0.960738 |
Target: 5'- gGUUCAGCGUacAGGUGAACGAgugaccgccgAAGGa -3' miRNA: 3'- -CAAGUUGUAcuUCCGUUUGCU----------UUCCg -5' |
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21167 | 5' | -44.4 | NC_004777.1 | + | 18959 | 1.15 | 0.003364 |
Target: 5'- aGUUCAACAUGAAGGCAAACGAAAGGCg -3' miRNA: 3'- -CAAGUUGUACUUCCGUUUGCUUUCCG- -5' |
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21167 | 5' | -44.4 | NC_004777.1 | + | 33206 | 0.66 | 0.996048 |
Target: 5'- uGUUCAACGUaGAGaguGGaCAAcaGCGAuAGGUg -3' miRNA: 3'- -CAAGUUGUA-CUU---CC-GUU--UGCUuUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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