miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21168 5' -52.8 NC_004777.1 + 19423 1.15 0.000364
Target:  5'- uGCAGCCAUACCUUGAGCCAACGCAGCg -3'
miRNA:   3'- -CGUCGGUAUGGAACUCGGUUGCGUCG- -5'
21168 5' -52.8 NC_004777.1 + 13898 0.77 0.177785
Target:  5'- aGCgAGCCAUGaagUGAGCCAA-GCAGCg -3'
miRNA:   3'- -CG-UCGGUAUggaACUCGGUUgCGUCG- -5'
21168 5' -52.8 NC_004777.1 + 3556 0.74 0.274899
Target:  5'- aGCAGCCAgcaGCuuagcggcagaCUUGAGCCAGuucauugcuucaacCGCAGCc -3'
miRNA:   3'- -CGUCGGUa--UG-----------GAACUCGGUU--------------GCGUCG- -5'
21168 5' -52.8 NC_004777.1 + 2792 0.72 0.385999
Target:  5'- --uGCCGauugguuUACCUUuAGCCAGCGuCAGCa -3'
miRNA:   3'- cguCGGU-------AUGGAAcUCGGUUGC-GUCG- -5'
21168 5' -52.8 NC_004777.1 + 26955 0.7 0.478064
Target:  5'- uCAGCCuugAUACCUUGaAGCaucucccACGCAGUa -3'
miRNA:   3'- cGUCGG---UAUGGAAC-UCGgu-----UGCGUCG- -5'
21168 5' -52.8 NC_004777.1 + 34256 0.69 0.53302
Target:  5'- cCAG-CAUACgUUGAGCCAuCGCuGUa -3'
miRNA:   3'- cGUCgGUAUGgAACUCGGUuGCGuCG- -5'
21168 5' -52.8 NC_004777.1 + 12655 0.68 0.567064
Target:  5'- uGCAGCUuUGCCaguUUG-GUCAAUGCAGg -3'
miRNA:   3'- -CGUCGGuAUGG---AACuCGGUUGCGUCg -5'
21168 5' -52.8 NC_004777.1 + 17337 0.68 0.59469
Target:  5'- aGCAGCCuGUGCUUcaucaauaacaccGGCCAGCGCAccaGCa -3'
miRNA:   3'- -CGUCGG-UAUGGAac-----------UCGGUUGCGU---CG- -5'
21168 5' -52.8 NC_004777.1 + 36335 0.66 0.717
Target:  5'- --uGUgAUAcCCUUGAGCCAgucAUGCAGa -3'
miRNA:   3'- cguCGgUAU-GGAACUCGGU---UGCGUCg -5'
21168 5' -52.8 NC_004777.1 + 19456 0.66 0.694261
Target:  5'- aGCAGCCAUaGCCUcaggUGAaGCC---GUAGCc -3'
miRNA:   3'- -CGUCGGUA-UGGA----ACU-CGGuugCGUCG- -5'
21168 5' -52.8 NC_004777.1 + 31812 0.66 0.702255
Target:  5'- uCAGCCAUaGCCaaaggagcgcccaaUUGAGaacuacgagaUAACGCAGCg -3'
miRNA:   3'- cGUCGGUA-UGG--------------AACUCg---------GUUGCGUCG- -5'
21168 5' -52.8 NC_004777.1 + 21776 0.66 0.728237
Target:  5'- aGCAGCCAacucagcuuCCUUucGGGCUuuguuaGCAGCg -3'
miRNA:   3'- -CGUCGGUau-------GGAA--CUCGGuug---CGUCG- -5'
21168 5' -52.8 NC_004777.1 + 13648 0.66 0.728237
Target:  5'- -aAGCCAUGCCUUGucucCCucaGCAGa -3'
miRNA:   3'- cgUCGGUAUGGAACuc--GGuugCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.