miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21170 5' -50.2 NC_004777.1 + 2597 0.66 0.819266
Target:  5'- aUGCUUGaGCaAGCCaacaagUUCG-CUAACCAu -3'
miRNA:   3'- -ACGAAC-CGaUUGGa-----AAGCcGAUUGGU- -5'
21170 5' -50.2 NC_004777.1 + 13837 0.67 0.798789
Target:  5'- cUGCUUGGCUcACUUcaUGGCUcGCUu -3'
miRNA:   3'- -ACGAACCGAuUGGAaaGCCGAuUGGu -5'
21170 5' -50.2 NC_004777.1 + 31765 0.67 0.788238
Target:  5'- gGCUaUGGCUGACCUagUUGGCg----- -3'
miRNA:   3'- aCGA-ACCGAUUGGAa-AGCCGauuggu -5'
21170 5' -50.2 NC_004777.1 + 20390 0.67 0.788238
Target:  5'- cGCUUGG-UAGCCUga-GGuUUAGCCGg -3'
miRNA:   3'- aCGAACCgAUUGGAaagCC-GAUUGGU- -5'
21170 5' -50.2 NC_004777.1 + 8764 0.68 0.755497
Target:  5'- aGUUUGGCUAACUug-CGGUUAcUCAu -3'
miRNA:   3'- aCGAACCGAUUGGaaaGCCGAUuGGU- -5'
21170 5' -50.2 NC_004777.1 + 23010 0.7 0.603234
Target:  5'- aUGCccaaUGGUUAGCCgaaaGGUUAGCCAa -3'
miRNA:   3'- -ACGa---ACCGAUUGGaaagCCGAUUGGU- -5'
21170 5' -50.2 NC_004777.1 + 23081 1.09 0.001614
Target:  5'- cUGCUUGGCUAACCUUUCGGCUAACCAu -3'
miRNA:   3'- -ACGAACCGAUUGGAAAGCCGAUUGGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.