Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21171 | 3' | -46.4 | NC_004777.1 | + | 24811 | 0.73 | 0.710129 |
Target: 5'- --gGUAUuuaauugaaUGUUCUCCCUGUGGUGGc- -3' miRNA: 3'- cagCAUA---------ACAAGAGGGAUAUCACUca -5' |
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21171 | 3' | -46.4 | NC_004777.1 | + | 24919 | 1.08 | 0.005896 |
Target: 5'- aGUCGUAUUGUUCUCCCUAUAGUGAGUc -3' miRNA: 3'- -CAGCAUAACAAGAGGGAUAUCACUCA- -5' |
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21171 | 3' | -46.4 | NC_004777.1 | + | 20549 | 0.84 | 0.224444 |
Target: 5'- cGUUGUGg---UCUCCCUAUAGUGAGUc -3' miRNA: 3'- -CAGCAUaacaAGAGGGAUAUCACUCA- -5' |
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21171 | 3' | -46.4 | NC_004777.1 | + | 9314 | 0.75 | 0.63794 |
Target: 5'- cGUUGUGg---UCUCCCUuUAGUGAGUu -3' miRNA: 3'- -CAGCAUaacaAGAGGGAuAUCACUCA- -5' |
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21171 | 3' | -46.4 | NC_004777.1 | + | 32199 | 0.72 | 0.756587 |
Target: 5'- uUCGcc----UCUCCCUAUAGUGAGUc -3' miRNA: 3'- cAGCauaacaAGAGGGAUAUCACUCA- -5' |
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21171 | 3' | -46.4 | NC_004777.1 | + | 19518 | 0.72 | 0.756587 |
Target: 5'- ------aUGaggUCUCCCUAUAGUGAGUc -3' miRNA: 3'- cagcauaACa--AGAGGGAUAUCACUCA- -5' |
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21171 | 3' | -46.4 | NC_004777.1 | + | 16257 | 0.72 | 0.77895 |
Target: 5'- ---------aUCUCCCUAUAGUGAGUc -3' miRNA: 3'- cagcauaacaAGAGGGAUAUCACUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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