miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21171 3' -46.4 NC_004777.1 + 24811 0.73 0.710129
Target:  5'- --gGUAUuuaauugaaUGUUCUCCCUGUGGUGGc- -3'
miRNA:   3'- cagCAUA---------ACAAGAGGGAUAUCACUca -5'
21171 3' -46.4 NC_004777.1 + 24919 1.08 0.005896
Target:  5'- aGUCGUAUUGUUCUCCCUAUAGUGAGUc -3'
miRNA:   3'- -CAGCAUAACAAGAGGGAUAUCACUCA- -5'
21171 3' -46.4 NC_004777.1 + 20549 0.84 0.224444
Target:  5'- cGUUGUGg---UCUCCCUAUAGUGAGUc -3'
miRNA:   3'- -CAGCAUaacaAGAGGGAUAUCACUCA- -5'
21171 3' -46.4 NC_004777.1 + 9314 0.75 0.63794
Target:  5'- cGUUGUGg---UCUCCCUuUAGUGAGUu -3'
miRNA:   3'- -CAGCAUaacaAGAGGGAuAUCACUCA- -5'
21171 3' -46.4 NC_004777.1 + 32199 0.72 0.756587
Target:  5'- uUCGcc----UCUCCCUAUAGUGAGUc -3'
miRNA:   3'- cAGCauaacaAGAGGGAUAUCACUCA- -5'
21171 3' -46.4 NC_004777.1 + 19518 0.72 0.756587
Target:  5'- ------aUGaggUCUCCCUAUAGUGAGUc -3'
miRNA:   3'- cagcauaACa--AGAGGGAUAUCACUCA- -5'
21171 3' -46.4 NC_004777.1 + 16257 0.72 0.77895
Target:  5'- ---------aUCUCCCUAUAGUGAGUc -3'
miRNA:   3'- cagcauaacaAGAGGGAUAUCACUCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.