miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21176 5' -42.7 NC_004777.1 + 5822 0.71 0.979454
Target:  5'- ----aUCGUAggAUgcCUUGCGCUCCa -3'
miRNA:   3'- cacucAGCAUaaUAaaGAAUGCGAGG- -5'
21176 5' -42.7 NC_004777.1 + 30154 0.68 0.996316
Target:  5'- -aGAGUCGccacaaaggggCUUACGUUCCu -3'
miRNA:   3'- caCUCAGCauaauaaa---GAAUGCGAGG- -5'
21176 5' -42.7 NC_004777.1 + 32184 1.14 0.007468
Target:  5'- aGUGAGUCGUAUUAUUUCUUACGCUCCc -3'
miRNA:   3'- -CACUCAGCAUAAUAAAGAAUGCGAGG- -5'
21176 5' -42.7 NC_004777.1 + 4105 0.74 0.911704
Target:  5'- aGUGAGUCGUAUUAaUUUgacgUUACGCa-- -3'
miRNA:   3'- -CACUCAGCAUAAUaAAG----AAUGCGagg -5'
21176 5' -42.7 NC_004777.1 + 24899 0.71 0.970178
Target:  5'- aGUGAGUCGUAUUaAUUUCUa--GCcaCCa -3'
miRNA:   3'- -CACUCAGCAUAA-UAAAGAaugCGa-GG- -5'
21176 5' -42.7 NC_004777.1 + 7193 0.71 0.970178
Target:  5'- aGUGAGUCGUAUUA---CUUugGUgCUa -3'
miRNA:   3'- -CACUCAGCAUAAUaaaGAAugCGaGG- -5'
21176 5' -42.7 NC_004777.1 + 16247 0.68 0.997555
Target:  5'- aGUGAGUCGUAUUAa--UUUAgGgaCCu -3'
miRNA:   3'- -CACUCAGCAUAAUaaaGAAUgCgaGG- -5'
21176 5' -42.7 NC_004777.1 + 5928 0.66 0.999362
Target:  5'- aGUGAGUCGUAUUAa-----GCGUgaccaUCCg -3'
miRNA:   3'- -CACUCAGCAUAAUaaagaaUGCG-----AGG- -5'
21176 5' -42.7 NC_004777.1 + 19503 0.66 0.999504
Target:  5'- aGUGAGUCGUAUUAa-----AUGC-CCg -3'
miRNA:   3'- -CACUCAGCAUAAUaaagaaUGCGaGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.