miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21177 5' -51.1 NC_004777.1 + 34603 1.1 0.001127
Target:  5'- cGAAUAGCAUCCCAGCGAGAACCCAAGg -3'
miRNA:   3'- -CUUAUCGUAGGGUCGCUCUUGGGUUC- -5'
21177 5' -51.1 NC_004777.1 + 35781 0.74 0.362908
Target:  5'- --uUGGaGUCCCAGCGAGuGCCuCAGGg -3'
miRNA:   3'- cuuAUCgUAGGGUCGCUCuUGG-GUUC- -5'
21177 5' -51.1 NC_004777.1 + 31675 0.71 0.506384
Target:  5'- -cAUAGCAUagaaaccaCCAGCGAG-ACCCAu- -3'
miRNA:   3'- cuUAUCGUAg-------GGUCGCUCuUGGGUuc -5'
21177 5' -51.1 NC_004777.1 + 36229 0.69 0.610125
Target:  5'- --uUAGCuuUCUUAGCGAGcAACUCAAGg -3'
miRNA:   3'- cuuAUCGu-AGGGUCGCUC-UUGGGUUC- -5'
21177 5' -51.1 NC_004777.1 + 30870 0.67 0.749296
Target:  5'- ---aGGCGuUCUUAGCGAaGAACCCuAGg -3'
miRNA:   3'- cuuaUCGU-AGGGUCGCU-CUUGGGuUC- -5'
21177 5' -51.1 NC_004777.1 + 20786 0.66 0.7925
Target:  5'- --cUGGCA-CCgGGUGAGAACCuCGAc -3'
miRNA:   3'- cuuAUCGUaGGgUCGCUCUUGG-GUUc -5'
21177 5' -51.1 NC_004777.1 + 23972 0.66 0.822939
Target:  5'- cGGUAcUAUCUCA-CGGGGACCCAAGu -3'
miRNA:   3'- cUUAUcGUAGGGUcGCUCUUGGGUUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.