miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 5' -56.9 NC_004778.3 + 54140 0.67 0.760143
Target:  5'- -cUGAcCGCGUCGCUggCCGaaaaGGaCGCAg -3'
miRNA:   3'- uuGCU-GCGCAGCGAaaGGCg---UC-GCGU- -5'
21182 5' -56.9 NC_004778.3 + 52054 0.68 0.73764
Target:  5'- aAGCGACGCGgccggCGCgugCgcauugcaccagcgCGCGGCGCGc -3'
miRNA:   3'- -UUGCUGCGCa----GCGaaaG--------------GCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 47392 0.73 0.439544
Target:  5'- cGCGACGUGUCGCa---CGCGcGCGCGu -3'
miRNA:   3'- uUGCUGCGCAGCGaaagGCGU-CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 44145 0.66 0.832887
Target:  5'- cAugGACGCGggCGUUUgCgGCGGCGaCGg -3'
miRNA:   3'- -UugCUGCGCa-GCGAAaGgCGUCGC-GU- -5'
21182 5' -56.9 NC_004778.3 + 44115 0.66 0.832887
Target:  5'- cAugGACGCGggCGUUUgCgGCGGCGaCGg -3'
miRNA:   3'- -UugCUGCGCa-GCGAAaGgCGUCGC-GU- -5'
21182 5' -56.9 NC_004778.3 + 43111 0.68 0.740607
Target:  5'- cGGCGGCugcuGCGcaagCGCUUcgacggcgCCGCGGCGCGc -3'
miRNA:   3'- -UUGCUG----CGCa---GCGAAa-------GGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 40742 0.69 0.638606
Target:  5'- gAGCGcACGCGcCGCUUgcUgCGCGGCGaCAu -3'
miRNA:   3'- -UUGC-UGCGCaGCGAA--AgGCGUCGC-GU- -5'
21182 5' -56.9 NC_004778.3 + 40527 0.71 0.556123
Target:  5'- -cCGGCGCGUCGCaUUCauUGGCGCGa -3'
miRNA:   3'- uuGCUGCGCAGCGaAAGgcGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 40075 0.67 0.779214
Target:  5'- cAACGAgGUGUCGU----CGCAGUGCGu -3'
miRNA:   3'- -UUGCUgCGCAGCGaaagGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 38086 0.66 0.797743
Target:  5'- uGCGGCGCGaCGCgcaacagCaCGCuAGCGCGc -3'
miRNA:   3'- uUGCUGCGCaGCGaaa----G-GCG-UCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 36639 0.73 0.421461
Target:  5'- aAACGGCGCuGgcgCGCUccgUUCCGguGUGCAu -3'
miRNA:   3'- -UUGCUGCG-Ca--GCGA---AAGGCguCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 34977 0.68 0.740607
Target:  5'- uAGCGGCaCGUCGCUUgugucgaacaUuuGCAGCGgAu -3'
miRNA:   3'- -UUGCUGcGCAGCGAA----------AggCGUCGCgU- -5'
21182 5' -56.9 NC_004778.3 + 34179 0.7 0.58684
Target:  5'- uAGCGACG-GUgCGgUcgCCGCGGCGCAc -3'
miRNA:   3'- -UUGCUGCgCA-GCgAaaGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 34150 0.69 0.679968
Target:  5'- cGACGACGCgGUCGC---CgGCGGCGaCAa -3'
miRNA:   3'- -UUGCUGCG-CAGCGaaaGgCGUCGC-GU- -5'
21182 5' -56.9 NC_004778.3 + 34031 0.7 0.58684
Target:  5'- uAGCG-CGCGUCGCUaagCUGCGacGCGCu -3'
miRNA:   3'- -UUGCuGCGCAGCGAaa-GGCGU--CGCGu -5'
21182 5' -56.9 NC_004778.3 + 33444 0.68 0.730687
Target:  5'- cGGCGGCGCGaaaagCGCggccgUCCGCacggcGGCGUg -3'
miRNA:   3'- -UUGCUGCGCa----GCGaa---AGGCG-----UCGCGu -5'
21182 5' -56.9 NC_004778.3 + 32981 0.66 0.796831
Target:  5'- -uCGACGUGUguacguuUGCguccUUCCGCGuGCGCAu -3'
miRNA:   3'- uuGCUGCGCA-------GCGa---AAGGCGU-CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 32906 0.69 0.638606
Target:  5'- cACGGCGCGUgcaCGC---CCGCAGaCGCGa -3'
miRNA:   3'- uUGCUGCGCA---GCGaaaGGCGUC-GCGU- -5'
21182 5' -56.9 NC_004778.3 + 31711 0.71 0.535903
Target:  5'- cGACGAUGCGguuUUGCUg--CGCGGCGCGc -3'
miRNA:   3'- -UUGCUGCGC---AGCGAaagGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 31232 0.76 0.308385
Target:  5'- --aGAgGCGUUGCUgUCCGUGGCGCGc -3'
miRNA:   3'- uugCUgCGCAGCGAaAGGCGUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.