miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21185 3' -59.6 NC_004778.3 + 120051 0.66 0.67927
Target:  5'- uGCGCGcGugGUGaaauuGGucGCCCAUCauGGGCAg -3'
miRNA:   3'- uUGCGC-CugCAC-----CC--UGGGUAG--UCCGU- -5'
21185 3' -59.6 NC_004778.3 + 105822 0.67 0.648858
Target:  5'- cAUGCGGACGUGGGACgUCGUU--GCc -3'
miRNA:   3'- uUGCGCCUGCACCCUG-GGUAGucCGu -5'
21185 3' -59.6 NC_004778.3 + 18239 0.69 0.534914
Target:  5'- --gGCGGAuuugguuuuggcgcUGUGGGACCCAUuUGGGUAc -3'
miRNA:   3'- uugCGCCU--------------GCACCCUGGGUA-GUCCGU- -5'
21185 3' -59.6 NC_004778.3 + 80652 0.7 0.470584
Target:  5'- gGACGUGGGCGUGGGAgaCGgu-GGCGc -3'
miRNA:   3'- -UUGCGCCUGCACCCUggGUaguCCGU- -5'
21185 3' -59.6 NC_004778.3 + 58418 0.77 0.189615
Target:  5'- uACGCGGuucCGUGGGACUguCGUCGGGUAa -3'
miRNA:   3'- uUGCGCCu--GCACCCUGG--GUAGUCCGU- -5'
21185 3' -59.6 NC_004778.3 + 125365 1.06 0.001703
Target:  5'- uAACGCGGACGUGGGACCCAUCAGGCAg -3'
miRNA:   3'- -UUGCGCCUGCACCCUGGGUAGUCCGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.