Results 81 - 100 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21186 | 3' | -51.3 | NC_004778.3 | + | 21747 | 0.7 | 0.896228 |
Target: 5'- ---aCCGCGCGugGcGGCCuccACGCg -3' miRNA: 3'- caaaGGCGCGCugCaCUGGuu-UGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 15457 | 0.7 | 0.915402 |
Target: 5'- --cUCCGCGCGACcacgccaaaGUGcuGCCGcGCAUCu -3' miRNA: 3'- caaAGGCGCGCUG---------CAC--UGGUuUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 18286 | 0.7 | 0.915402 |
Target: 5'- uGUUUCCGCGCGA-GUuuCCcGACgACCu -3' miRNA: 3'- -CAAAGGCGCGCUgCAcuGGuUUG-UGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 74119 | 0.7 | 0.915402 |
Target: 5'- ---gCUGCGCGGCGUGcCCGAuCAUUu -3' miRNA: 3'- caaaGGCGCGCUGCACuGGUUuGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 34392 | 0.7 | 0.915402 |
Target: 5'- aGUUUuuGCaGCu-CGUGGCCGGGCugCu -3' miRNA: 3'- -CAAAggCG-CGcuGCACUGGUUUGugG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 95776 | 0.7 | 0.90287 |
Target: 5'- --aUCCGCGCGGCagcgcgccGGCCGcgcuGCGCCc -3' miRNA: 3'- caaAGGCGCGCUGca------CUGGUu---UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 5956 | 0.71 | 0.874842 |
Target: 5'- -cUUCCuCGCuGAUGUGACCGuGCGCg -3' miRNA: 3'- caAAGGcGCG-CUGCACUGGUuUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 38299 | 0.71 | 0.88221 |
Target: 5'- ---gCCaGCGCGcACGcGACCGcGCGCCg -3' miRNA: 3'- caaaGG-CGCGC-UGCaCUGGUuUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 61660 | 0.71 | 0.88221 |
Target: 5'- ---gCCGCGCGcAUGcugGGCCAGcCGCCg -3' miRNA: 3'- caaaGGCGCGC-UGCa--CUGGUUuGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 86362 | 0.71 | 0.859416 |
Target: 5'- --aUCgGCGCGACc---CCAAGCACCu -3' miRNA: 3'- caaAGgCGCGCUGcacuGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 21630 | 0.71 | 0.88221 |
Target: 5'- cGUUUCC-UGCG-CGUuGCCAAACGCUa -3' miRNA: 3'- -CAAAGGcGCGCuGCAcUGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 87781 | 0.71 | 0.859416 |
Target: 5'- ---gUUGCGCGACGUGAUUAAucaGCGCa -3' miRNA: 3'- caaaGGCGCGCUGCACUGGUU---UGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 120047 | 0.71 | 0.88221 |
Target: 5'- aGUUUgCGCGCGugGUGAaauugguCGCCc -3' miRNA: 3'- -CAAAgGCGCGCugCACUgguuu--GUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 38115 | 0.71 | 0.859416 |
Target: 5'- ----aCGCGuUGACGUGugCGuGCGCCa -3' miRNA: 3'- caaagGCGC-GCUGCACugGUuUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 56993 | 0.71 | 0.88221 |
Target: 5'- ---cCUGUGCGGCG-GGCCAGGCgaguuuGCCg -3' miRNA: 3'- caaaGGCGCGCUGCaCUGGUUUG------UGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 76287 | 0.72 | 0.843947 |
Target: 5'- ---gCCGCGCGcCGUGAacggcucgcauuuggCAAGCGCCg -3' miRNA: 3'- caaaGGCGCGCuGCACUg--------------GUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 55277 | 0.72 | 0.818032 |
Target: 5'- -gUUCCGCGCagcgccagcacguuCGUGACCGAGCAa- -3' miRNA: 3'- caAAGGCGCGcu------------GCACUGGUUUGUgg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 17172 | 0.73 | 0.79891 |
Target: 5'- -aUUCCGCGCGGgcacCGcGACUgcacGGACGCCa -3' miRNA: 3'- caAAGGCGCGCU----GCaCUGG----UUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 32269 | 0.73 | 0.789549 |
Target: 5'- ---aCCGCGC-ACGcUGGCCGgcGGCGCCg -3' miRNA: 3'- caaaGGCGCGcUGC-ACUGGU--UUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 4048 | 0.73 | 0.780036 |
Target: 5'- --gUUCGC-CGGCGggcaGGCCGAGCGCCu -3' miRNA: 3'- caaAGGCGcGCUGCa---CUGGUUUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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