Results 101 - 114 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21186 | 3' | -51.3 | NC_004778.3 | + | 119188 | 0.66 | 0.984172 |
Target: 5'- ---cCCGCGCGcaaucggcGCGcUGcgcACUAAACACCu -3' miRNA: 3'- caaaGGCGCGC--------UGC-AC---UGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 41220 | 0.66 | 0.984172 |
Target: 5'- -gUUUCGCGUuuGACGggcGGCC--GCGCCg -3' miRNA: 3'- caAAGGCGCG--CUGCa--CUGGuuUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 57056 | 0.66 | 0.985976 |
Target: 5'- -gUUCgGUGUcACGcUGACCAGgaauGCGCCg -3' miRNA: 3'- caAAGgCGCGcUGC-ACUGGUU----UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 28600 | 0.66 | 0.984172 |
Target: 5'- cGUUUgCGCGUGGCGUcGACgugcggggaAGugACCa -3' miRNA: 3'- -CAAAgGCGCGCUGCA-CUGg--------UUugUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 46214 | 0.66 | 0.984172 |
Target: 5'- uUUUUCGuCGCGGCGc-ACCAucACGCCu -3' miRNA: 3'- cAAAGGC-GCGCUGCacUGGUu-UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 33360 | 0.66 | 0.984172 |
Target: 5'- ---gCCGCggGCGACGUcgcgGACgAcGCGCCg -3' miRNA: 3'- caaaGGCG--CGCUGCA----CUGgUuUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 14283 | 0.66 | 0.984172 |
Target: 5'- ---gCCGCGaagucaACGUGGCCAccAACACg -3' miRNA: 3'- caaaGGCGCgc----UGCACUGGU--UUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 89334 | 0.66 | 0.983982 |
Target: 5'- uUUUCCGUGggccgauugcCGACGUcgcuuugugguucGACCAGACugUa -3' miRNA: 3'- cAAAGGCGC----------GCUGCA-------------CUGGUUUGugG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 17108 | 0.66 | 0.987619 |
Target: 5'- --gUgCGCGCGGCGcGccuACCGuggcAACGCCg -3' miRNA: 3'- caaAgGCGCGCUGCaC---UGGU----UUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 13417 | 0.66 | 0.985976 |
Target: 5'- aUUUCCGCcCGuuUGUGGCacAGCACCa -3' miRNA: 3'- cAAAGGCGcGCu-GCACUGguUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 118777 | 0.66 | 0.985976 |
Target: 5'- -cUUCgGgCGCGGCGcGGCCGGcgcGCACa -3' miRNA: 3'- caAAGgC-GCGCUGCaCUGGUU---UGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 121620 | 0.66 | 0.988966 |
Target: 5'- ----gCGCGCGGuccacgcCGUcGGCCGAGCGCa -3' miRNA: 3'- caaagGCGCGCU-------GCA-CUGGUUUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 32975 | 0.66 | 0.985976 |
Target: 5'- ---gCCGCGuCGACGUGugUAcguuuGCGuCCu -3' miRNA: 3'- caaaGGCGC-GCUGCACugGUu----UGU-GG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 10745 | 0.66 | 0.990455 |
Target: 5'- --cUCCGCGgGcugcCGUGugC--GCGCCg -3' miRNA: 3'- caaAGGCGCgCu---GCACugGuuUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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