miRNA display CGI


Results 81 - 100 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 33466 0.68 0.962873
Target:  5'- --gUCCGCacgGCGGCGUGcucGCCGacGACAUg -3'
miRNA:   3'- caaAGGCG---CGCUGCAC---UGGU--UUGUGg -5'
21186 3' -51.3 NC_004778.3 + 33360 0.66 0.984172
Target:  5'- ---gCCGCggGCGACGUcgcgGACgAcGCGCCg -3'
miRNA:   3'- caaaGGCG--CGCUGCA----CUGgUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 32975 0.66 0.985976
Target:  5'- ---gCCGCGuCGACGUGugUAcguuuGCGuCCu -3'
miRNA:   3'- caaaGGCGC-GCUGCACugGUu----UGU-GG- -5'
21186 3' -51.3 NC_004778.3 + 32832 0.69 0.951248
Target:  5'- aGUUUCgGaCGCGgcuggccuACGUGGCC-GACAUCg -3'
miRNA:   3'- -CAAAGgC-GCGC--------UGCACUGGuUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 32269 0.73 0.789549
Target:  5'- ---aCCGCGC-ACGcUGGCCGgcGGCGCCg -3'
miRNA:   3'- caaaGGCGCGcUGC-ACUGGU--UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 32084 0.68 0.962873
Target:  5'- ----aCGUGCGGCGUGugCGAauuuaAUACUa -3'
miRNA:   3'- caaagGCGCGCUGCACugGUU-----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 28825 0.7 0.921287
Target:  5'- -aUUgCGCGCGAUGcugGACCAgcuacAACugCa -3'
miRNA:   3'- caAAgGCGCGCUGCa--CUGGU-----UUGugG- -5'
21186 3' -51.3 NC_004778.3 + 28600 0.66 0.984172
Target:  5'- cGUUUgCGCGUGGCGUcGACgugcggggaAGugACCa -3'
miRNA:   3'- -CAAAgGCGCGCUGCA-CUGg--------UUugUGG- -5'
21186 3' -51.3 NC_004778.3 + 26069 0.69 0.946886
Target:  5'- ---aCCGC-CGuCGUGGCCAcGGCGCUg -3'
miRNA:   3'- caaaGGCGcGCuGCACUGGU-UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 26022 0.68 0.964942
Target:  5'- --gUCCGCcaacauggcggcaCGACGUGuccGCCAAACACg -3'
miRNA:   3'- caaAGGCGc------------GCUGCAC---UGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 21747 0.7 0.896228
Target:  5'- ---aCCGCGCGugGcGGCCuccACGCg -3'
miRNA:   3'- caaaGGCGCGCugCaCUGGuu-UGUGg -5'
21186 3' -51.3 NC_004778.3 + 21630 0.71 0.88221
Target:  5'- cGUUUCC-UGCG-CGUuGCCAAACGCUa -3'
miRNA:   3'- -CAAAGGcGCGCuGCAcUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 21254 0.67 0.975157
Target:  5'- --gUCCGCGCGGCagguUGAgCAgAugGCCc -3'
miRNA:   3'- caaAGGCGCGCUGc---ACUgGU-UugUGG- -5'
21186 3' -51.3 NC_004778.3 + 18308 0.68 0.959237
Target:  5'- --gUCCGCGUGuu-UGACCAcGCGCa -3'
miRNA:   3'- caaAGGCGCGCugcACUGGUuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 18286 0.7 0.915402
Target:  5'- uGUUUCCGCGCGA-GUuuCCcGACgACCu -3'
miRNA:   3'- -CAAAGGCGCGCUgCAcuGGuUUG-UGG- -5'
21186 3' -51.3 NC_004778.3 + 17859 0.69 0.932291
Target:  5'- ---aCCGCGCGccgucCGUGACUuuggcGCGCCc -3'
miRNA:   3'- caaaGGCGCGCu----GCACUGGuu---UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 17604 0.67 0.982196
Target:  5'- ---aCUGCGCGAUuuUGACUAuacGGCGCCc -3'
miRNA:   3'- caaaGGCGCGCUGc-ACUGGU---UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 17172 0.73 0.79891
Target:  5'- -aUUCCGCGCGGgcacCGcGACUgcacGGACGCCa -3'
miRNA:   3'- caAAGGCGCGCU----GCaCUGG----UUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 17108 0.66 0.987619
Target:  5'- --gUgCGCGCGGCGcGccuACCGuggcAACGCCg -3'
miRNA:   3'- caaAgGCGCGCUGCaC---UGGU----UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 15457 0.7 0.915402
Target:  5'- --cUCCGCGCGACcacgccaaaGUGcuGCCGcGCAUCu -3'
miRNA:   3'- caaAGGCGCGCUG---------CAC--UGGUuUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.