Results 101 - 114 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21186 | 3' | -51.3 | NC_004778.3 | + | 15390 | 0.66 | 0.989109 |
Target: 5'- ---gCCGCGCGGCcaaccuaaaGACCAAAgACg -3' miRNA: 3'- caaaGGCGCGCUGca-------CUGGUUUgUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 15072 | 0.69 | 0.926917 |
Target: 5'- --cUCCGC-C-ACGUGACCGAGCAa- -3' miRNA: 3'- caaAGGCGcGcUGCACUGGUUUGUgg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 14283 | 0.66 | 0.984172 |
Target: 5'- ---gCCGCGaagucaACGUGGCCAccAACACg -3' miRNA: 3'- caaaGGCGCgc----UGCACUGGU--UUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 13417 | 0.66 | 0.985976 |
Target: 5'- aUUUCCGCcCGuuUGUGGCacAGCACCa -3' miRNA: 3'- cAAAGGCGcGCu-GCACUGguUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 10745 | 0.66 | 0.990455 |
Target: 5'- --cUCCGCGgGcugcCGUGugC--GCGCCg -3' miRNA: 3'- caaAGGCGCgCu---GCACugGuuUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 10705 | 0.69 | 0.93741 |
Target: 5'- uGUgcgCCGcCGCGcCGaGGCCAAGCGCa -3' miRNA: 3'- -CAaa-GGC-GCGCuGCaCUGGUUUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 8493 | 0.68 | 0.966276 |
Target: 5'- -gUUCCgcaaGCGCGGCGUGGuagCAGACgaaACCa -3' miRNA: 3'- caAAGG----CGCGCUGCACUg--GUUUG---UGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 7147 | 0.68 | 0.969454 |
Target: 5'- --aUCCGUcucggcggGCGGCGc-GCCGAGCACUa -3' miRNA: 3'- caaAGGCG--------CGCUGCacUGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 6772 | 0.68 | 0.955364 |
Target: 5'- -cUUCCGCGCGGCucaUGaacacuGCCAGAUGCg -3' miRNA: 3'- caAAGGCGCGCUGc--AC------UGGUUUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 5956 | 0.71 | 0.874842 |
Target: 5'- -cUUCCuCGCuGAUGUGACCGuGCGCg -3' miRNA: 3'- caAAGGcGCG-CUGCACUGGUuUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 4869 | 0.69 | 0.942274 |
Target: 5'- -gUUgCGCGCGcgccuACGUGACUcgGCGCg -3' miRNA: 3'- caAAgGCGCGC-----UGCACUGGuuUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 4048 | 0.73 | 0.780036 |
Target: 5'- --gUUCGC-CGGCGggcaGGCCGAGCGCCu -3' miRNA: 3'- caaAGGCGcGCUGCa---CUGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 3223 | 0.74 | 0.720334 |
Target: 5'- --gUCCucgugGCGCGcCGUGAUCAcgGACACCa -3' miRNA: 3'- caaAGG-----CGCGCuGCACUGGU--UUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 2389 | 0.75 | 0.667208 |
Target: 5'- -cUUCCGCGCG--GUGGCCGAcgugcccGCGCCc -3' miRNA: 3'- caAAGGCGCGCugCACUGGUU-------UGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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