miRNA display CGI


Results 101 - 114 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 40759 0.66 0.990455
Target:  5'- ---gCUGCGCGGCGacaucccGuCCAAuuGCGCCa -3'
miRNA:   3'- caaaGGCGCGCUGCa------CuGGUU--UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 41220 0.66 0.984172
Target:  5'- -gUUUCGCGUuuGACGggcGGCC--GCGCCg -3'
miRNA:   3'- caAAGGCGCG--CUGCa--CUGGuuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 124997 0.67 0.982196
Target:  5'- ---gCCGCGCGAUuccgGACgaAGACACUg -3'
miRNA:   3'- caaaGGCGCGCUGca--CUGg-UUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 17604 0.67 0.982196
Target:  5'- ---aCUGCGCGAUuuUGACUAuacGGCGCCc -3'
miRNA:   3'- caaaGGCGCGCUGc-ACUGGU---UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 67821 0.68 0.959237
Target:  5'- ---gCUGCGCGGC---GCCAAACGCUu -3'
miRNA:   3'- caaaGGCGCGCUGcacUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 72640 0.68 0.959237
Target:  5'- -cUUCCGuUGCGACaUGACgCAGAUgggGCCg -3'
miRNA:   3'- caAAGGC-GCGCUGcACUG-GUUUG---UGG- -5'
21186 3' -51.3 NC_004778.3 + 26022 0.68 0.964942
Target:  5'- --gUCCGCcaacauggcggcaCGACGUGuccGCCAAACACg -3'
miRNA:   3'- caaAGGCGc------------GCUGCAC---UGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 90494 0.68 0.966276
Target:  5'- ----gUGCGCGGCGgcGACC--ACGCCg -3'
miRNA:   3'- caaagGCGCGCUGCa-CUGGuuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 91590 0.68 0.966276
Target:  5'- --gUCUGCGCGugcGCGUcGA-UAAGCACCa -3'
miRNA:   3'- caaAGGCGCGC---UGCA-CUgGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 103066 0.68 0.966276
Target:  5'- ----gUGUGCuACGUGACCAAACuggauGCCg -3'
miRNA:   3'- caaagGCGCGcUGCACUGGUUUG-----UGG- -5'
21186 3' -51.3 NC_004778.3 + 46184 0.67 0.977698
Target:  5'- -gUUCCGCGCGucugcaacaACGcaGCCAAuCGCCc -3'
miRNA:   3'- caAAGGCGCGC---------UGCacUGGUUuGUGG- -5'
21186 3' -51.3 NC_004778.3 + 114914 0.67 0.977698
Target:  5'- --gUCCgGCaCGACGUGACgCAcGCGCg -3'
miRNA:   3'- caaAGG-CGcGCUGCACUG-GUuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 65299 0.67 0.98178
Target:  5'- -----gGCGCGACGcgcugagUGACCGuugcuugGGCGCCg -3'
miRNA:   3'- caaaggCGCGCUGC-------ACUGGU-------UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 63689 0.66 0.990455
Target:  5'- ---aCCGCcCGGCucgcUGcGCCAAACGCCg -3'
miRNA:   3'- caaaGGCGcGCUGc---AC-UGGUUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.