miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 21254 0.67 0.975157
Target:  5'- --gUCCGCGCGGCagguUGAgCAgAugGCCc -3'
miRNA:   3'- caaAGGCGCGCUGc---ACUgGU-UugUGG- -5'
21186 3' -51.3 NC_004778.3 + 119383 0.68 0.969454
Target:  5'- aGUUUaCUGCGuCGGaguaUGUGACCGGuuuucGCGCCg -3'
miRNA:   3'- -CAAA-GGCGC-GCU----GCACUGGUU-----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 15072 0.69 0.926917
Target:  5'- --cUCCGC-C-ACGUGACCGAGCAa- -3'
miRNA:   3'- caaAGGCGcGcUGCACUGGUUUGUgg -5'
21186 3' -51.3 NC_004778.3 + 15457 0.7 0.915402
Target:  5'- --cUCCGCGCGACcacgccaaaGUGcuGCCGcGCAUCu -3'
miRNA:   3'- caaAGGCGCGCUG---------CAC--UGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 57488 0.69 0.926917
Target:  5'- ---gCCGCGCGACGgaaaaGCCGAcaugGCGCg -3'
miRNA:   3'- caaaGGCGCGCUGCac---UGGUU----UGUGg -5'
21186 3' -51.3 NC_004778.3 + 33677 0.69 0.926917
Target:  5'- ---gCCGCGagugGugGUGACCAcguauGACACg -3'
miRNA:   3'- caaaGGCGCg---CugCACUGGU-----UUGUGg -5'
21186 3' -51.3 NC_004778.3 + 34418 0.69 0.926917
Target:  5'- --cUCCggcaGCGCGGCGUGcCCGuACugCu -3'
miRNA:   3'- caaAGG----CGCGCUGCACuGGUuUGugG- -5'
21186 3' -51.3 NC_004778.3 + 65259 0.69 0.926917
Target:  5'- uGUUUCgGCGCgcaauuguacGACGUGAUgGAcgcccaccGCGCCa -3'
miRNA:   3'- -CAAAGgCGCG----------CUGCACUGgUU--------UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 61374 0.69 0.942274
Target:  5'- ---gCCgGCGCGuCGUcGCUGAGCGCCa -3'
miRNA:   3'- caaaGG-CGCGCuGCAcUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 52627 0.67 0.975157
Target:  5'- ---aUCGCGCGGCGaauagucGCgGAACGCCu -3'
miRNA:   3'- caaaGGCGCGCUGCac-----UGgUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 59604 0.67 0.975157
Target:  5'- ---gCCGCGCcACuUGGCCGAAaACCg -3'
miRNA:   3'- caaaGGCGCGcUGcACUGGUUUgUGG- -5'
21186 3' -51.3 NC_004778.3 + 32975 0.66 0.985976
Target:  5'- ---gCCGCGuCGACGUGugUAcguuuGCGuCCu -3'
miRNA:   3'- caaaGGCGC-GCUGCACugGUu----UGU-GG- -5'
21186 3' -51.3 NC_004778.3 + 28600 0.66 0.984172
Target:  5'- cGUUUgCGCGUGGCGUcGACgugcggggaAGugACCa -3'
miRNA:   3'- -CAAAgGCGCGCUGCA-CUGg--------UUugUGG- -5'
21186 3' -51.3 NC_004778.3 + 46214 0.66 0.984172
Target:  5'- uUUUUCGuCGCGGCGc-ACCAucACGCCu -3'
miRNA:   3'- cAAAGGC-GCGCUGCacUGGUu-UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 33360 0.66 0.984172
Target:  5'- ---gCCGCggGCGACGUcgcgGACgAcGCGCCg -3'
miRNA:   3'- caaaGGCG--CGCUGCA----CUGgUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 14283 0.66 0.984172
Target:  5'- ---gCCGCGaagucaACGUGGCCAccAACACg -3'
miRNA:   3'- caaaGGCGCgc----UGCACUGGU--UUGUGg -5'
21186 3' -51.3 NC_004778.3 + 89334 0.66 0.983982
Target:  5'- uUUUCCGUGggccgauugcCGACGUcgcuuugugguucGACCAGACugUa -3'
miRNA:   3'- cAAAGGCGC----------GCUGCA-------------CUGGUUUGugG- -5'
21186 3' -51.3 NC_004778.3 + 56917 0.67 0.982196
Target:  5'- --gUCCGCGCuGC-UGGCgCAAACugGCCg -3'
miRNA:   3'- caaAGGCGCGcUGcACUG-GUUUG--UGG- -5'
21186 3' -51.3 NC_004778.3 + 124502 0.67 0.981989
Target:  5'- ---cCCGUGCGucgagucACGUaGGCCGAuaaacACGCCg -3'
miRNA:   3'- caaaGGCGCGC-------UGCA-CUGGUU-----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 61986 0.67 0.977698
Target:  5'- ---gCCGCuGCG-CGUGGCCAauuggGACAUg -3'
miRNA:   3'- caaaGGCG-CGCuGCACUGGU-----UUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.