Results 81 - 100 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21186 | 3' | -51.3 | NC_004778.3 | + | 119383 | 0.68 | 0.969454 |
Target: 5'- aGUUUaCUGCGuCGGaguaUGUGACCGGuuuucGCGCCg -3' miRNA: 3'- -CAAA-GGCGC-GCU----GCACUGGUU-----UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 21254 | 0.67 | 0.975157 |
Target: 5'- --gUCCGCGCGGCagguUGAgCAgAugGCCc -3' miRNA: 3'- caaAGGCGCGCUGc---ACUgGU-UugUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 52627 | 0.67 | 0.975157 |
Target: 5'- ---aUCGCGCGGCGaauagucGCgGAACGCCu -3' miRNA: 3'- caaaGGCGCGCUGCac-----UGgUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 59604 | 0.67 | 0.975157 |
Target: 5'- ---gCCGCGCcACuUGGCCGAAaACCg -3' miRNA: 3'- caaaGGCGCGcUGcACUGGUUUgUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 61986 | 0.67 | 0.977698 |
Target: 5'- ---gCCGCuGCG-CGUGGCCAauuggGACAUg -3' miRNA: 3'- caaaGGCG-CGCuGCACUGGU-----UUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 124502 | 0.67 | 0.981989 |
Target: 5'- ---cCCGUGCGucgagucACGUaGGCCGAuaaacACGCCg -3' miRNA: 3'- caaaGGCGCGC-------UGCA-CUGGUU-----UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 56917 | 0.67 | 0.982196 |
Target: 5'- --gUCCGCGCuGC-UGGCgCAAACugGCCg -3' miRNA: 3'- caaAGGCGCGcUGcACUG-GUUUG--UGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 89334 | 0.66 | 0.983982 |
Target: 5'- uUUUCCGUGggccgauugcCGACGUcgcuuugugguucGACCAGACugUa -3' miRNA: 3'- cAAAGGCGC----------GCUGCA-------------CUGGUUUGugG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 14283 | 0.66 | 0.984172 |
Target: 5'- ---gCCGCGaagucaACGUGGCCAccAACACg -3' miRNA: 3'- caaaGGCGCgc----UGCACUGGU--UUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 7147 | 0.68 | 0.969454 |
Target: 5'- --aUCCGUcucggcggGCGGCGc-GCCGAGCACUa -3' miRNA: 3'- caaAGGCG--------CGCUGCacUGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 8493 | 0.68 | 0.966276 |
Target: 5'- -gUUCCgcaaGCGCGGCGUGGuagCAGACgaaACCa -3' miRNA: 3'- caAAGG----CGCGCUGCACUg--GUUUG---UGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 6772 | 0.68 | 0.955364 |
Target: 5'- -cUUCCGCGCGGCucaUGaacacuGCCAGAUGCg -3' miRNA: 3'- caAAGGCGCGCUGc--AC------UGGUUUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 110078 | 0.68 | 0.958861 |
Target: 5'- gGUUUCCGggcaCGCGuuuguucaaaacgGCGUGcgcGCCGAGCGCUu -3' miRNA: 3'- -CAAAGGC----GCGC-------------UGCAC---UGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 18308 | 0.68 | 0.959237 |
Target: 5'- --gUCCGCGUGuu-UGACCAcGCGCa -3' miRNA: 3'- caaAGGCGCGCugcACUGGUuUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 107677 | 0.68 | 0.959237 |
Target: 5'- ---gUCGCGCGACGaaACCuuGCGCg -3' miRNA: 3'- caaaGGCGCGCUGCacUGGuuUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 43365 | 0.68 | 0.959237 |
Target: 5'- -aUUUCGCGcCGugGUGuuGCCGcAGCACg -3' miRNA: 3'- caAAGGCGC-GCugCAC--UGGU-UUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 81224 | 0.68 | 0.959237 |
Target: 5'- ---aCUGCGUGAUGcGACUguucaaAAGCACCa -3' miRNA: 3'- caaaGGCGCGCUGCaCUGG------UUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 32084 | 0.68 | 0.962873 |
Target: 5'- ----aCGUGCGGCGUGugCGAauuuaAUACUa -3' miRNA: 3'- caaagGCGCGCUGCACugGUU-----UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 33466 | 0.68 | 0.962873 |
Target: 5'- --gUCCGCacgGCGGCGUGcucGCCGacGACAUg -3' miRNA: 3'- caaAGGCG---CGCUGCAC---UGGU--UUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 80718 | 0.68 | 0.966276 |
Target: 5'- ----aCGCaC-AUGUGGCCGAGCACCg -3' miRNA: 3'- caaagGCGcGcUGCACUGGUUUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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