miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 5' -52.6 NC_004778.3 + 122669 1.05 0.007944
Target:  5'- gGCAGUGUUCAUGAGCCGCGCGGAAg- -3'
miRNA:   3'- -CGUCACAAGUACUCGGCGCGCCUUau -5'
21186 5' -52.6 NC_004778.3 + 112269 0.66 0.950333
Target:  5'- uGCAGUcg-CGgu-GcCCGCGCGGAAUAg -3'
miRNA:   3'- -CGUCAcaaGUacuC-GGCGCGCCUUAU- -5'
21186 5' -52.6 NC_004778.3 + 60230 0.7 0.804173
Target:  5'- aUAGUGUcuuaUCAUGuuGCUGCGCGGGc-- -3'
miRNA:   3'- cGUCACA----AGUACu-CGGCGCGCCUuau -5'
21186 5' -52.6 NC_004778.3 + 42321 0.66 0.958504
Target:  5'- uGCGaUGUuugccaucUUAUGucGCCGCGCGGAAc- -3'
miRNA:   3'- -CGUcACA--------AGUACu-CGGCGCGCCUUau -5'
21186 5' -52.6 NC_004778.3 + 26808 0.68 0.907392
Target:  5'- aUAGagGUUgcUGGGCCGCGCGGGu-- -3'
miRNA:   3'- cGUCa-CAAguACUCGGCGCGCCUuau -5'
21186 5' -52.6 NC_004778.3 + 12418 0.69 0.887032
Target:  5'- uCGGUGUUCGUGGucguGCCGgugGCGGggUc -3'
miRNA:   3'- cGUCACAAGUACU----CGGCg--CGCCuuAu -5'
21186 5' -52.6 NC_004778.3 + 6804 0.66 0.965702
Target:  5'- -gGGUGUUUGgucacGUCGCGCGGAAa- -3'
miRNA:   3'- cgUCACAAGUacu--CGGCGCGCCUUau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.