miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21187 5' -50.4 NC_004778.3 + 86344 0.66 0.986798
Target:  5'- -aGCAGcCGCCGGU-AGUAAGgccgCGCGc -3'
miRNA:   3'- gaCGUU-GCGGUCGuUCGUUUaa--GCGC- -5'
21187 5' -50.4 NC_004778.3 + 119001 0.66 0.986798
Target:  5'- cCU-CAACGCCGcGCAAGUuAAUUgGCa -3'
miRNA:   3'- -GAcGUUGCGGU-CGUUCGuUUAAgCGc -5'
21187 5' -50.4 NC_004778.3 + 95216 0.66 0.986798
Target:  5'- -gGuCAGCGCCGGguGGCAGcacauUUgGCGc -3'
miRNA:   3'- gaC-GUUGCGGUCguUCGUUu----AAgCGC- -5'
21187 5' -50.4 NC_004778.3 + 90937 0.66 0.986798
Target:  5'- -gGCAuggACGCCGaacgcgucGCGuuAGCGGAUUUGCGc -3'
miRNA:   3'- gaCGU---UGCGGU--------CGU--UCGUUUAAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 84021 0.66 0.986798
Target:  5'- -cGCcGCGCCAGCAaaacuaacAGCAuca--GCGa -3'
miRNA:   3'- gaCGuUGCGGUCGU--------UCGUuuaagCGC- -5'
21187 5' -50.4 NC_004778.3 + 68215 0.66 0.986284
Target:  5'- aUGCGcguuuuuACGCCGGCAcauggGGCAuucgacgcgcuuGUUUGCGg -3'
miRNA:   3'- gACGU-------UGCGGUCGU-----UCGUu-----------UAAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 108438 0.66 0.985024
Target:  5'- gCUGguGCGCC-GCGGGCuguAUUUGUu -3'
miRNA:   3'- -GACguUGCGGuCGUUCGuu-UAAGCGc -5'
21187 5' -50.4 NC_004778.3 + 99999 0.66 0.985024
Target:  5'- uUGCGuauACGCCAGCAGGa----UUGCa -3'
miRNA:   3'- gACGU---UGCGGUCGUUCguuuaAGCGc -5'
21187 5' -50.4 NC_004778.3 + 46680 0.66 0.985024
Target:  5'- -cGCuAACGCC-GCuucGGCGucggAAUUCGCGg -3'
miRNA:   3'- gaCG-UUGCGGuCGu--UCGU----UUAAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 71499 0.66 0.985024
Target:  5'- -cGCAGCGCaGGCGcGCGcGUUUGCc -3'
miRNA:   3'- gaCGUUGCGgUCGUuCGUuUAAGCGc -5'
21187 5' -50.4 NC_004778.3 + 18552 0.66 0.985024
Target:  5'- -gGCcaGGCGCUGGCcAGC-AGUUCGCu -3'
miRNA:   3'- gaCG--UUGCGGUCGuUCGuUUAAGCGc -5'
21187 5' -50.4 NC_004778.3 + 127079 0.66 0.985024
Target:  5'- gUGC-ACGcCCGGCGAGUgc--UCGCGu -3'
miRNA:   3'- gACGuUGC-GGUCGUUCGuuuaAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 81731 0.66 0.985024
Target:  5'- -aGCGGCGCCuGCGauauccggcgcGGCGGGUg-GCGg -3'
miRNA:   3'- gaCGUUGCGGuCGU-----------UCGUUUAagCGC- -5'
21187 5' -50.4 NC_004778.3 + 127815 0.67 0.983073
Target:  5'- -cGCAGCG-CAGCAAGCGcaa-CGUGu -3'
miRNA:   3'- gaCGUUGCgGUCGUUCGUuuaaGCGC- -5'
21187 5' -50.4 NC_004778.3 + 75312 0.67 0.983073
Target:  5'- -aGCGACGCgguCAGCu-GCGAAaUCGUGu -3'
miRNA:   3'- gaCGUUGCG---GUCGuuCGUUUaAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 85121 0.67 0.982868
Target:  5'- -cGCGGCGCCgcucgucgcuGGCGGGCAugaaacggcguuuGAgcgCGCGa -3'
miRNA:   3'- gaCGUUGCGG----------UCGUUCGU-------------UUaa-GCGC- -5'
21187 5' -50.4 NC_004778.3 + 63694 0.67 0.980937
Target:  5'- gUGCAGCGCguccaguucCGGCgAAGCAAucaCGCGc -3'
miRNA:   3'- gACGUUGCG---------GUCG-UUCGUUuaaGCGC- -5'
21187 5' -50.4 NC_004778.3 + 42071 0.67 0.980937
Target:  5'- -cGCAGggacaaGCCAuCGAGCAAAguaggUCGCGa -3'
miRNA:   3'- gaCGUUg-----CGGUcGUUCGUUUa----AGCGC- -5'
21187 5' -50.4 NC_004778.3 + 81789 0.67 0.980937
Target:  5'- gCUGCGacacaaACGCUAGCcgauuuuugucgAAGCAGAUgaaacugugCGCGg -3'
miRNA:   3'- -GACGU------UGCGGUCG------------UUCGUUUAa--------GCGC- -5'
21187 5' -50.4 NC_004778.3 + 125532 0.67 0.980937
Target:  5'- aCUGCuACGCgGGCGAGUccaggUCgGCGg -3'
miRNA:   3'- -GACGuUGCGgUCGUUCGuuua-AG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.