miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 3' -54.9 NC_004778.3 + 17232 0.7 0.762432
Target:  5'- cCGcGCGGcc-GCUaUGcGCGAgGGCGCCg -3'
miRNA:   3'- -GC-CGCCaauUGA-ACaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 67802 0.7 0.752793
Target:  5'- gCGGC-GUUGGCgcgcgcugGcUGCG-CGGCGCCa -3'
miRNA:   3'- -GCCGcCAAUUGaa------C-ACGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 43992 0.7 0.752793
Target:  5'- aGGCGGUgauUGGCgacccUGcUGCGugGGCGaCg -3'
miRNA:   3'- gCCGCCA---AUUGa----AC-ACGCugCCGCgG- -5'
21188 3' -54.9 NC_004778.3 + 114007 0.71 0.713246
Target:  5'- aGGCGGcgcuGCgagcaGUGCuuugauaucGGCGGCGCCa -3'
miRNA:   3'- gCCGCCaau-UGaa---CACG---------CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 60983 0.72 0.662299
Target:  5'- cCGGCGGc-GGCggcgGCGGCGGCGgCg -3'
miRNA:   3'- -GCCGCCaaUUGaacaCGCUGCCGCgG- -5'
21188 3' -54.9 NC_004778.3 + 52581 0.72 0.628264
Target:  5'- aGGCGGUcgaaAGCcUGUuugaaauuaaaaugGCGaACGGCGCCa -3'
miRNA:   3'- gCCGCCAa---UUGaACA--------------CGC-UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 76404 0.75 0.499868
Target:  5'- gCGGCGGUU-GCUgugGCGGCGGuUGCUg -3'
miRNA:   3'- -GCCGCCAAuUGAacaCGCUGCC-GCGG- -5'
21188 3' -54.9 NC_004778.3 + 71322 0.68 0.850873
Target:  5'- uCGGCGcGuUUAACUcGUggggcucgaggcGCGGCGGCGgCa -3'
miRNA:   3'- -GCCGC-C-AAUUGAaCA------------CGCUGCCGCgG- -5'
21188 3' -54.9 NC_004778.3 + 7902 0.68 0.858735
Target:  5'- gGGCGuGUU-GCUg--GcCGGCGGCGCUu -3'
miRNA:   3'- gCCGC-CAAuUGAacaC-GCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 44102 0.66 0.935479
Target:  5'- gCGGCGGcgAugUcaUGgacgcgggcguuUGCGGCGGCGaCg -3'
miRNA:   3'- -GCCGCCaaUugA--AC------------ACGCUGCCGCgG- -5'
21188 3' -54.9 NC_004778.3 + 85701 0.66 0.935479
Target:  5'- gCGGUGGacacaUGAUgUGUcccgGCG-CGGCGCCc -3'
miRNA:   3'- -GCCGCCa----AUUGaACA----CGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 104200 0.66 0.933475
Target:  5'- aGGCGGgcGACgacccggcucGCGAUcaucaaaaaugGGCGCCg -3'
miRNA:   3'- gCCGCCaaUUGaaca------CGCUG-----------CCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 84118 0.66 0.930395
Target:  5'- cCGGCGGcgAGCgcacacaGCgGACGGCGUUc -3'
miRNA:   3'- -GCCGCCaaUUGaaca---CG-CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 34292 0.66 0.930395
Target:  5'- uCGGCGGUcGugUgGUGgaacaaacggccCGACGuGCGUCg -3'
miRNA:   3'- -GCCGCCAaUugAaCAC------------GCUGC-CGCGG- -5'
21188 3' -54.9 NC_004778.3 + 107935 0.66 0.930395
Target:  5'- aGGUuucGGccGGCg---GUGGCGGCGCCa -3'
miRNA:   3'- gCCG---CCaaUUGaacaCGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 9889 0.66 0.913684
Target:  5'- uGGUGGcUuuCUUGUaGCGcUGGCGCa -3'
miRNA:   3'- gCCGCCaAuuGAACA-CGCuGCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 117425 0.66 0.913684
Target:  5'- aGaGCGGcUugUUUGUgauaaGCGGCGGCGCg -3'
miRNA:   3'- gC-CGCCaAuuGAACA-----CGCUGCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 89847 0.67 0.90763
Target:  5'- uGGCGGUca------GCGACGGCGUg -3'
miRNA:   3'- gCCGCCAauugaacaCGCUGCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 36203 0.67 0.90763
Target:  5'- aGGCaGaucGCg---GCGAUGGCGCCg -3'
miRNA:   3'- gCCGcCaauUGaacaCGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 83021 0.67 0.901336
Target:  5'- --aUGGUcAGgUUGUGCGACGcggcacGCGCCa -3'
miRNA:   3'- gccGCCAaUUgAACACGCUGC------CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.