miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 5' -54.3 NC_004778.3 + 8033 0.68 0.856956
Target:  5'- cGCGuGCCUGCUGCUCAGcc---GCACGu -3'
miRNA:   3'- -CGU-CGGGCGGCGGGUUuauaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 3480 0.68 0.844799
Target:  5'- uGCAGCuCCGCCGCCUuuuccuccugaaCGCGg -3'
miRNA:   3'- -CGUCG-GGCGGCGGGuuuauaac----GUGC- -5'
21188 5' -54.3 NC_004778.3 + 47690 0.73 0.603548
Target:  5'- cGCAGucgguccgccaCCCGCCGCgCCGGAUAUcGCAgGc -3'
miRNA:   3'- -CGUC-----------GGGCGGCG-GGUUUAUAaCGUgC- -5'
21188 5' -54.3 NC_004778.3 + 96501 0.66 0.93742
Target:  5'- cGCGGCggugUCGuCCGCCCAAcacaguGUGUucgcgucugcgggcgUGCACGc -3'
miRNA:   3'- -CGUCG----GGC-GGCGGGUU------UAUA---------------ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 46220 0.85 0.124179
Target:  5'- uGCAGCuggCCGCCGCUgAAAUGUUGCACa -3'
miRNA:   3'- -CGUCG---GGCGGCGGgUUUAUAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 43985 0.72 0.635049
Target:  5'- -uGGCgCGCCGCCCAAc----GCGCGg -3'
miRNA:   3'- cgUCGgGCGGCGGGUUuauaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 106299 0.71 0.687382
Target:  5'- cGCccguGCCCGCCGCagccccagccCCGGuuugAUUGCGCGc -3'
miRNA:   3'- -CGu---CGGGCGGCG----------GGUUua--UAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 52521 0.73 0.561891
Target:  5'- cCAGCCgGCCGgCCAAcugcGUGUUGCAa- -3'
miRNA:   3'- cGUCGGgCGGCgGGUU----UAUAACGUgc -5'
21188 5' -54.3 NC_004778.3 + 49055 0.66 0.919119
Target:  5'- aCAGCggGUCGCCCGGGUuagGCACu -3'
miRNA:   3'- cGUCGggCGGCGGGUUUAuaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 42632 0.69 0.805685
Target:  5'- uGCGuuCCCGCCGCCgAcgg--UGCACGa -3'
miRNA:   3'- -CGUc-GGGCGGCGGgUuuauaACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 70332 0.66 0.913183
Target:  5'- uGCAGUugcaCGCgGCCCAcAUAgcGCACc -3'
miRNA:   3'- -CGUCGg---GCGgCGGGUuUAUaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 45538 0.66 0.913183
Target:  5'- cGCAGCCCGUCGCggaauCCAcugcaAGUcgUuaacgcGCACGu -3'
miRNA:   3'- -CGUCGGGCGGCG-----GGU-----UUAuaA------CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 95784 0.67 0.900562
Target:  5'- gGCAGCgCGCCGgCCGcgc--UGCGCc -3'
miRNA:   3'- -CGUCGgGCGGCgGGUuuauaACGUGc -5'
21188 5' -54.3 NC_004778.3 + 89856 0.67 0.893882
Target:  5'- cGUAGgCUGCCGCggAGAUGUUGC-CGc -3'
miRNA:   3'- -CGUCgGGCGGCGggUUUAUAACGuGC- -5'
21188 5' -54.3 NC_004778.3 + 55965 0.67 0.886961
Target:  5'- uGCAcGCacaugUCGCCGCCCAcGUccUGCAUGu -3'
miRNA:   3'- -CGU-CG-----GGCGGCGGGUuUAuaACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 112355 0.67 0.882695
Target:  5'- cGCAGCCuCGCCGaCUAAAUgccagcuugaccgcaAgcGCGCGg -3'
miRNA:   3'- -CGUCGG-GCGGCgGGUUUA---------------UaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 93377 0.67 0.886961
Target:  5'- aGCAGCgaaaCUGCCCGAggauGUcgUGCACGg -3'
miRNA:   3'- -CGUCGggc-GGCGGGUU----UAuaACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 1599 0.68 0.840643
Target:  5'- uGCGGCCCGuCCGCgcacuccuUCAAAcacacGUUGCGCu -3'
miRNA:   3'- -CGUCGGGC-GGCG--------GGUUUa----UAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 80283 0.69 0.823531
Target:  5'- gGCAGCUCaUCGCCCGAcUGggcgUGCAUa -3'
miRNA:   3'- -CGUCGGGcGGCGGGUUuAUa---ACGUGc -5'
21188 5' -54.3 NC_004778.3 + 33833 0.69 0.823531
Target:  5'- gGCAGCCUGCgCGCUCAacgccGAUAaccGCugGu -3'
miRNA:   3'- -CGUCGGGCG-GCGGGU-----UUAUaa-CGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.