Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 44854 | 0.68 | 0.950794 |
Target: 5'- cGCGUCauuauGUCACC-CGCCAGUuugGCg -3' miRNA: 3'- -CGCAGccgu-UAGUGGaGCGGUUAa--CG- -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 5871 | 0.68 | 0.962193 |
Target: 5'- aCGUUGGCu-UCuuCCUCGUCAAUgaaaccgUGCg -3' miRNA: 3'- cGCAGCCGuuAGu-GGAGCGGUUA-------ACG- -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 77925 | 0.68 | 0.958874 |
Target: 5'- cCGUCGGCA---GCCUaaCGCUGAUUGa -3' miRNA: 3'- cGCAGCCGUuagUGGA--GCGGUUAACg -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 101378 | 0.68 | 0.958874 |
Target: 5'- aGCGaCGGC-AUCGCCUUuCCAAacUUGUu -3' miRNA: 3'- -CGCaGCCGuUAGUGGAGcGGUU--AACG- -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 104768 | 0.69 | 0.91991 |
Target: 5'- aGCGUgCGGCAagugcgcGUCAUaUUGaCCAAUUGCc -3' miRNA: 3'- -CGCA-GCCGU-------UAGUGgAGC-GGUUAACG- -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 19912 | 0.69 | 0.931622 |
Target: 5'- uGCGUCGGCGccgACCUCGCUu----- -3' miRNA: 3'- -CGCAGCCGUuagUGGAGCGGuuaacg -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 109997 | 0.69 | 0.928392 |
Target: 5'- gGUGUCGGUggUgACCacgguguuucggcgCGCCGAcgGCg -3' miRNA: 3'- -CGCAGCCGuuAgUGGa-------------GCGGUUaaCG- -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 26539 | 0.69 | 0.931622 |
Target: 5'- gGCGcCGGCAAgUAUUUCGCUAGcguggUGCg -3' miRNA: 3'- -CGCaGCCGUUaGUGGAGCGGUUa----ACG- -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 81695 | 0.69 | 0.946383 |
Target: 5'- aCGUCGGCGuguaugCGCCacaaggcuugCGCCAGcgGCa -3' miRNA: 3'- cGCAGCCGUua----GUGGa---------GCGGUUaaCG- -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 121159 | 0.69 | 0.946383 |
Target: 5'- gGCGUgGGCAG-CACCgcuagaauauUCGCgGuUUGCg -3' miRNA: 3'- -CGCAgCCGUUaGUGG----------AGCGgUuAACG- -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 76430 | 0.69 | 0.926187 |
Target: 5'- uGUGgCGGCGGUUGCUguggCGgCGGUUGCg -3' miRNA: 3'- -CGCaGCCGUUAGUGGa---GCgGUUAACG- -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 117539 | 0.69 | 0.920494 |
Target: 5'- uGCaGUUGGCg--CGCUUgcaaCGCCGGUUGCa -3' miRNA: 3'- -CG-CAGCCGuuaGUGGA----GCGGUUAACG- -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 66687 | 0.69 | 0.931622 |
Target: 5'- uGCGUCGGCGccgACCUCGCUu----- -3' miRNA: 3'- -CGCAGCCGUuagUGGAGCGGuuaacg -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 24911 | 0.69 | 0.941718 |
Target: 5'- cGCGUguuguugccaCGGCucGUCAUCUUGCuccCAGUUGCc -3' miRNA: 3'- -CGCA----------GCCGu-UAGUGGAGCG---GUUAACG- -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 20033 | 0.69 | 0.931622 |
Target: 5'- uGCGUCGGCGccgACCUCGCUu----- -3' miRNA: 3'- -CGCAGCCGUuagUGGAGCGGuuaacg -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 37986 | 0.7 | 0.910848 |
Target: 5'- cGCGUCaGCAGUCAugcacacgucaacguCCUUGCUuaaagUGCa -3' miRNA: 3'- -CGCAGcCGUUAGU---------------GGAGCGGuua--ACG- -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 18926 | 0.7 | 0.908335 |
Target: 5'- uUGUCGGCAAUUuucuguuuuACCUgGCCGAcaguaUGCc -3' miRNA: 3'- cGCAGCCGUUAG---------UGGAgCGGUUa----ACG- -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 49503 | 0.7 | 0.895158 |
Target: 5'- aGCGUugCGGCA--CGCCUCGUCGggaauGUUGUc -3' miRNA: 3'- -CGCA--GCCGUuaGUGGAGCGGU-----UAACG- -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 95260 | 0.7 | 0.895158 |
Target: 5'- uGCGccgCGGCGAccgCACCgUCGCUAAcgcgUGCu -3' miRNA: 3'- -CGCa--GCCGUUa--GUGG-AGCGGUUa---ACG- -5' |
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21189 | 3' | -51.3 | NC_004778.3 | + | 66816 | 0.7 | 0.901872 |
Target: 5'- uGCGUCGGCGccgACCUCGCUuuUUa- -3' miRNA: 3'- -CGCAGCCGUuagUGGAGCGGuuAAcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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