miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21189 3' -51.3 NC_004778.3 + 77925 0.68 0.958874
Target:  5'- cCGUCGGCA---GCCUaaCGCUGAUUGa -3'
miRNA:   3'- cGCAGCCGUuagUGGA--GCGGUUAACg -5'
21189 3' -51.3 NC_004778.3 + 101378 0.68 0.958874
Target:  5'- aGCGaCGGC-AUCGCCUUuCCAAacUUGUu -3'
miRNA:   3'- -CGCaGCCGuUAGUGGAGcGGUU--AACG- -5'
21189 3' -51.3 NC_004778.3 + 90672 0.68 0.954957
Target:  5'- uCGUgGGCAAcCGCCUUGCagaGAgccUGCa -3'
miRNA:   3'- cGCAgCCGUUaGUGGAGCGg--UUa--ACG- -5'
21189 3' -51.3 NC_004778.3 + 44854 0.68 0.950794
Target:  5'- cGCGUCauuauGUCACC-CGCCAGUuugGCg -3'
miRNA:   3'- -CGCAGccgu-UAGUGGaGCGGUUAa--CG- -5'
21189 3' -51.3 NC_004778.3 + 121159 0.69 0.946383
Target:  5'- gGCGUgGGCAG-CACCgcuagaauauUCGCgGuUUGCg -3'
miRNA:   3'- -CGCAgCCGUUaGUGG----------AGCGgUuAACG- -5'
21189 3' -51.3 NC_004778.3 + 81695 0.69 0.946383
Target:  5'- aCGUCGGCGuguaugCGCCacaaggcuugCGCCAGcgGCa -3'
miRNA:   3'- cGCAGCCGUua----GUGGa---------GCGGUUaaCG- -5'
21189 3' -51.3 NC_004778.3 + 24911 0.69 0.941718
Target:  5'- cGCGUguuguugccaCGGCucGUCAUCUUGCuccCAGUUGCc -3'
miRNA:   3'- -CGCA----------GCCGu-UAGUGGAGCG---GUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 20033 0.69 0.931622
Target:  5'- uGCGUCGGCGccgACCUCGCUu----- -3'
miRNA:   3'- -CGCAGCCGUuagUGGAGCGGuuaacg -5'
21189 3' -51.3 NC_004778.3 + 66687 0.69 0.931622
Target:  5'- uGCGUCGGCGccgACCUCGCUu----- -3'
miRNA:   3'- -CGCAGCCGUuagUGGAGCGGuuaacg -5'
21189 3' -51.3 NC_004778.3 + 26539 0.69 0.931622
Target:  5'- gGCGcCGGCAAgUAUUUCGCUAGcguggUGCg -3'
miRNA:   3'- -CGCaGCCGUUaGUGGAGCGGUUa----ACG- -5'
21189 3' -51.3 NC_004778.3 + 19912 0.69 0.931622
Target:  5'- uGCGUCGGCGccgACCUCGCUu----- -3'
miRNA:   3'- -CGCAGCCGUuagUGGAGCGGuuaacg -5'
21189 3' -51.3 NC_004778.3 + 109997 0.69 0.928392
Target:  5'- gGUGUCGGUggUgACCacgguguuucggcgCGCCGAcgGCg -3'
miRNA:   3'- -CGCAGCCGuuAgUGGa-------------GCGGUUaaCG- -5'
21189 3' -51.3 NC_004778.3 + 76430 0.69 0.926187
Target:  5'- uGUGgCGGCGGUUGCUguggCGgCGGUUGCg -3'
miRNA:   3'- -CGCaGCCGUUAGUGGa---GCgGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 117539 0.69 0.920494
Target:  5'- uGCaGUUGGCg--CGCUUgcaaCGCCGGUUGCa -3'
miRNA:   3'- -CG-CAGCCGuuaGUGGA----GCGGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 104768 0.69 0.91991
Target:  5'- aGCGUgCGGCAagugcgcGUCAUaUUGaCCAAUUGCc -3'
miRNA:   3'- -CGCA-GCCGU-------UAGUGgAGC-GGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 37986 0.7 0.910848
Target:  5'- cGCGUCaGCAGUCAugcacacgucaacguCCUUGCUuaaagUGCa -3'
miRNA:   3'- -CGCAGcCGUUAGU---------------GGAGCGGuua--ACG- -5'
21189 3' -51.3 NC_004778.3 + 38608 0.7 0.908335
Target:  5'- cGUGUCGGCaAAUCugCUCagugcccgGCCGAgcugGUa -3'
miRNA:   3'- -CGCAGCCG-UUAGugGAG--------CGGUUaa--CG- -5'
21189 3' -51.3 NC_004778.3 + 18926 0.7 0.908335
Target:  5'- uUGUCGGCAAUUuucuguuuuACCUgGCCGAcaguaUGCc -3'
miRNA:   3'- cGCAGCCGUUAG---------UGGAgCGGUUa----ACG- -5'
21189 3' -51.3 NC_004778.3 + 119192 0.7 0.901872
Target:  5'- cGCGcaaUCGGCGcgcugcgcacuaAaCACCUgcucgcCGCCAAUUGCg -3'
miRNA:   3'- -CGC---AGCCGU------------UaGUGGA------GCGGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 66816 0.7 0.901872
Target:  5'- uGCGUCGGCGccgACCUCGCUuuUUa- -3'
miRNA:   3'- -CGCAGCCGUuagUGGAGCGGuuAAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.