miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21189 5' -61.9 NC_004778.3 + 115298 0.68 0.482312
Target:  5'- aUGCGCCGaaaaaauUGAGGCGGcCGGCCGc-- -3'
miRNA:   3'- gACGCGGCg------GCUCUGCU-GCCGGCaca -5'
21189 5' -61.9 NC_004778.3 + 75146 0.68 0.482312
Target:  5'- uUG-GCCGCCGGGGCGGgcucacUGGCCGc-- -3'
miRNA:   3'- gACgCGGCGGCUCUGCU------GCCGGCaca -5'
21189 5' -61.9 NC_004778.3 + 69773 0.68 0.473192
Target:  5'- -gGUGUgGCgCGAGAaccgagaGGCGGCCGUGc -3'
miRNA:   3'- gaCGCGgCG-GCUCUg------CUGCCGGCACa -5'
21189 5' -61.9 NC_004778.3 + 8001 0.68 0.473192
Target:  5'- gUGCGCggCGCCGAcGGCGgcgacACGGCCGa-- -3'
miRNA:   3'- gACGCG--GCGGCU-CUGC-----UGCCGGCaca -5'
21189 5' -61.9 NC_004778.3 + 25084 0.68 0.473192
Target:  5'- -cGCGCCGaCCGAGucacguACGcCGGCCaacGUGUu -3'
miRNA:   3'- gaCGCGGC-GGCUC------UGCuGCCGG---CACA- -5'
21189 5' -61.9 NC_004778.3 + 61000 0.69 0.464159
Target:  5'- -gGCGgCGgCGGcGGCGGCGGCgGUGg -3'
miRNA:   3'- gaCGCgGCgGCU-CUGCUGCCGgCACa -5'
21189 5' -61.9 NC_004778.3 + 43988 0.69 0.464159
Target:  5'- -cGCGCCGCCca-ACGcGCGGCCGgcggGUa -3'
miRNA:   3'- gaCGCGGCGGcucUGC-UGCCGGCa---CA- -5'
21189 5' -61.9 NC_004778.3 + 32271 0.7 0.411968
Target:  5'- -cGCGCaCGCUGGccGGCGGCG-CCGUGUc -3'
miRNA:   3'- gaCGCG-GCGGCU--CUGCUGCcGGCACA- -5'
21189 5' -61.9 NC_004778.3 + 100357 0.7 0.371355
Target:  5'- -cGCuCCGCCGAGGCGGCGcCCGa-- -3'
miRNA:   3'- gaCGcGGCGGCUCUGCUGCcGGCaca -5'
21189 5' -61.9 NC_004778.3 + 128473 0.71 0.363567
Target:  5'- gCUGCGCCGaUCGAcgccGACGACGGUCa--- -3'
miRNA:   3'- -GACGCGGC-GGCU----CUGCUGCCGGcaca -5'
21189 5' -61.9 NC_004778.3 + 121408 0.71 0.355892
Target:  5'- -cGUGCgGCUGAGcagcaggcacGCGuCGGCCGUGUc -3'
miRNA:   3'- gaCGCGgCGGCUC----------UGCuGCCGGCACA- -5'
21189 5' -61.9 NC_004778.3 + 103374 0.72 0.305407
Target:  5'- -aGCGCCGUgGccACGACGGCgGUGg -3'
miRNA:   3'- gaCGCGGCGgCucUGCUGCCGgCACa -5'
21189 5' -61.9 NC_004778.3 + 65156 0.72 0.29866
Target:  5'- ---aGCgGCCGGGugGACGGCCGc-- -3'
miRNA:   3'- gacgCGgCGGCUCugCUGCCGGCaca -5'
21189 5' -61.9 NC_004778.3 + 1261 0.77 0.15014
Target:  5'- uCUGCGCuUGUgGGGACGACGGCggCGUGUa -3'
miRNA:   3'- -GACGCG-GCGgCUCUGCUGCCG--GCACA- -5'
21189 5' -61.9 NC_004778.3 + 119991 1.06 0.001252
Target:  5'- gCUGCGCCGCCGAGACGACGGCCGUGUc -3'
miRNA:   3'- -GACGCGGCGGCUCUGCUGCCGGCACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.