miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 3' -56.8 NC_004778.3 + 77374 0.84 0.102828
Target:  5'- cGCGCUggUGCAAUGCGCacgCGCCGG-CCg -3'
miRNA:   3'- -CGCGGaaACGUUACGCG---GCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 79834 0.67 0.803229
Target:  5'- aGCGCCc---CAGUGCGCuCGCaCGG-CUa -3'
miRNA:   3'- -CGCGGaaacGUUACGCG-GCG-GCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 80112 0.71 0.554789
Target:  5'- gGUGCCgcacacGUuGUGCGgCGCCGcGUCCa -3'
miRNA:   3'- -CGCGGaaa---CGuUACGCgGCGGC-CAGG- -5'
21190 3' -56.8 NC_004778.3 + 81734 0.66 0.861436
Target:  5'- gGCGCC--UGCGAUauccgGCGCgGCgGGUg- -3'
miRNA:   3'- -CGCGGaaACGUUA-----CGCGgCGgCCAgg -5'
21190 3' -56.8 NC_004778.3 + 81773 0.69 0.707662
Target:  5'- uGCGCCgguaggUGCGcgGC-CUGCCGGg-- -3'
miRNA:   3'- -CGCGGaa----ACGUuaCGcGGCGGCCagg -5'
21190 3' -56.8 NC_004778.3 + 85281 0.66 0.845744
Target:  5'- cGCGUCcaUGCcGU-CGCCGCCGcaaacgcccgcGUCCa -3'
miRNA:   3'- -CGCGGaaACGuUAcGCGGCGGC-----------CAGG- -5'
21190 3' -56.8 NC_004778.3 + 86333 0.71 0.554789
Target:  5'- aGCGCUUgcGCA--GCaGCCGCCGGUa- -3'
miRNA:   3'- -CGCGGAaaCGUuaCG-CGGCGGCCAgg -5'
21190 3' -56.8 NC_004778.3 + 90013 0.66 0.845744
Target:  5'- -aGUCg--GCAAaGCGgCGCCGGUgCu -3'
miRNA:   3'- cgCGGaaaCGUUaCGCgGCGGCCAgG- -5'
21190 3' -56.8 NC_004778.3 + 90454 0.69 0.707662
Target:  5'- -gGCCUggcUUGCuAcgGCGCCGCCGuGaUCa -3'
miRNA:   3'- cgCGGA---AACG-UuaCGCGGCGGC-C-AGg -5'
21190 3' -56.8 NC_004778.3 + 91807 0.68 0.747181
Target:  5'- gGUGCCg--GuCAcgGCGCCGCCGa--- -3'
miRNA:   3'- -CGCGGaaaC-GUuaCGCGGCGGCcagg -5'
21190 3' -56.8 NC_004778.3 + 92731 0.67 0.82076
Target:  5'- gGCGCCg--GCGGUGCGCgucuuggcgaGCgCGGUg- -3'
miRNA:   3'- -CGCGGaaaCGUUACGCGg---------CG-GCCAgg -5'
21190 3' -56.8 NC_004778.3 + 92894 0.69 0.667113
Target:  5'- cGCGCCg--GUuccaAAUGCGgCGCgucaUGGUCCa -3'
miRNA:   3'- -CGCGGaaaCG----UUACGCgGCG----GCCAGG- -5'
21190 3' -56.8 NC_004778.3 + 92969 0.66 0.837601
Target:  5'- cGUGCUUacGCAuguuuGUGCaacgacaaagucGCCGCCGG-CCg -3'
miRNA:   3'- -CGCGGAaaCGU-----UACG------------CGGCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 93621 0.67 0.812077
Target:  5'- gGCGCUUguugGUGcgGCGCCggGUCGGgcagCCg -3'
miRNA:   3'- -CGCGGAaa--CGUuaCGCGG--CGGCCa---GG- -5'
21190 3' -56.8 NC_004778.3 + 95016 0.67 0.803229
Target:  5'- uGCGCCgacggGCAgGUGCGCCuggaccaccCCGG-CCu -3'
miRNA:   3'- -CGCGGaaa--CGU-UACGCGGc--------GGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 95277 0.66 0.861436
Target:  5'- aUGCUgc-GCAGcuUGuCGCCGCCGGcgaCCg -3'
miRNA:   3'- cGCGGaaaCGUU--AC-GCGGCGGCCa--GG- -5'
21190 3' -56.8 NC_004778.3 + 95763 0.68 0.733504
Target:  5'- cGCGCCgggcgcuauccGCGcgGCaGCgCGCCGG-CCg -3'
miRNA:   3'- -CGCGGaaa--------CGUuaCG-CG-GCGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 96003 0.67 0.785075
Target:  5'- cGCGCUUUUc----GCGCCGCCGcaUCCa -3'
miRNA:   3'- -CGCGGAAAcguuaCGCGGCGGCc-AGG- -5'
21190 3' -56.8 NC_004778.3 + 96534 0.66 0.853691
Target:  5'- cGCGUCUgcgggcgUGCAc-GCGCCGUgcaCGG-CCa -3'
miRNA:   3'- -CGCGGAa------ACGUuaCGCGGCG---GCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 97162 0.72 0.495633
Target:  5'- -aGCCcga-CAcgGCGCCGCCGG-CCa -3'
miRNA:   3'- cgCGGaaacGUuaCGCGGCGGCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.