miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 81460 0.67 0.822594
Target:  5'- --uGCGCGCgUGCGCGCguacuGGCGCgUGc -3'
miRNA:   3'- agcCGCGCG-ACGCGUGau---UUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 81697 0.67 0.822594
Target:  5'- gUCGGCGUGUaUGCGCcacaagGCUu-GCGCCa- -3'
miRNA:   3'- -AGCCGCGCG-ACGCG------UGAuuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 82049 0.67 0.822594
Target:  5'- aCGcGCGCGCgUGCGaCACgucGCGCCc- -3'
miRNA:   3'- aGC-CGCGCG-ACGC-GUGauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 64678 0.67 0.822594
Target:  5'- aUCGGCGCcgUGUGCACgguuuauGCACgUGa -3'
miRNA:   3'- -AGCCGCGcgACGCGUGauu----UGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 23993 0.67 0.828637
Target:  5'- aUCGGC-CGCUGCGUgaccguuaagggucACUAu-CGCCUc -3'
miRNA:   3'- -AGCCGcGCGACGCG--------------UGAUuuGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 9511 0.67 0.802136
Target:  5'- gCGGCGgaauaucgaugcccUGCUcGCGCACUAgcuuauacGACACCa- -3'
miRNA:   3'- aGCCGC--------------GCGA-CGCGUGAU--------UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 5371 0.67 0.795737
Target:  5'- aUCaGCGCGCcGUGCAuCUgcacGAGCACUUGc -3'
miRNA:   3'- -AGcCGCGCGaCGCGU-GA----UUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 86362 0.67 0.812922
Target:  5'- aUCGGCGCGaccccaagcacCUGCaGCGCcuuauccaacuuaUGAACGCCg- -3'
miRNA:   3'- -AGCCGCGC-----------GACG-CGUG-------------AUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 32455 0.67 0.804855
Target:  5'- gCGGCGCagccGCUGCGUgucgcCUuuGCACCa- -3'
miRNA:   3'- aGCCGCG----CGACGCGu----GAuuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 61630 0.67 0.795737
Target:  5'- uUUGGCGcCGCgcagccaGCGCGCgccAACGCCg- -3'
miRNA:   3'- -AGCCGC-GCGa------CGCGUGau-UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 53167 0.67 0.839616
Target:  5'- aCGGCGCGCgGCGUuuCUAccuuuAACAgCCUu -3'
miRNA:   3'- aGCCGCGCGaCGCGu-GAU-----UUGU-GGAc -5'
21190 5' -55.9 NC_004778.3 + 95793 0.67 0.826059
Target:  5'- cCGGcCGCGCUGCGCcccguggauucuuuCUAAACaacgACCg- -3'
miRNA:   3'- aGCC-GCGCGACGCGu-------------GAUUUG----UGGac -5'
21190 5' -55.9 NC_004778.3 + 92930 0.67 0.795737
Target:  5'- gCGGCGC-CUGCGUAUUGuuaACCg- -3'
miRNA:   3'- aGCCGCGcGACGCGUGAUuugUGGac -5'
21190 5' -55.9 NC_004778.3 + 91343 0.68 0.77705
Target:  5'- gCGuGCGCGCUaGCGUGCUGuugcgcgucGCGCCg- -3'
miRNA:   3'- aGC-CGCGCGA-CGCGUGAUu--------UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 125972 0.68 0.748034
Target:  5'- gCGGCGgaGCUGCaGCGCaUGAAgGCCg- -3'
miRNA:   3'- aGCCGCg-CGACG-CGUG-AUUUgUGGac -5'
21190 5' -55.9 NC_004778.3 + 17408 0.68 0.786465
Target:  5'- -gGGCGCGCUGgGCAacgauUACCg- -3'
miRNA:   3'- agCCGCGCGACgCGUgauuuGUGGac -5'
21190 5' -55.9 NC_004778.3 + 111596 0.68 0.786465
Target:  5'- aCGGCGCGCgGUGuUACgc-GCGCCg- -3'
miRNA:   3'- aGCCGCGCGaCGC-GUGauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 118948 0.68 0.77705
Target:  5'- uUCGGCGUug-GCGCACaccGACGCCa- -3'
miRNA:   3'- -AGCCGCGcgaCGCGUGau-UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 99397 0.68 0.786465
Target:  5'- aCGGCGCGuUUGCGUucACUAcuGACgAUCUGu -3'
miRNA:   3'- aGCCGCGC-GACGCG--UGAU--UUG-UGGAC- -5'
21190 5' -55.9 NC_004778.3 + 110876 0.68 0.77705
Target:  5'- -aGGCGCGUguacaGCGaacuGCUGgccAGCGCCUGg -3'
miRNA:   3'- agCCGCGCGa----CGCg---UGAU---UUGUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.