miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 43110 0.69 0.738138
Target:  5'- cCGGCG-GCUGCuGCGC-AAGCGCUUc -3'
miRNA:   3'- aGCCGCgCGACG-CGUGaUUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 2194 0.69 0.718068
Target:  5'- -gGGaGCGCUggauaGCGCGCUAGugGCCa- -3'
miRNA:   3'- agCCgCGCGA-----CGCGUGAUUugUGGac -5'
21190 5' -55.9 NC_004778.3 + 51716 0.69 0.697693
Target:  5'- cUCGGUGCGCgcggGUGUGCUGAggucguagauccGCACgUGc -3'
miRNA:   3'- -AGCCGCGCGa---CGCGUGAUU------------UGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 74154 0.69 0.698718
Target:  5'- uUCGGC-CGCUGCGCGCgccagcgacucguACACUUc -3'
miRNA:   3'- -AGCCGcGCGACGCGUGauu----------UGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 38887 0.69 0.707914
Target:  5'- cUCGGCggcgaGCGCUGC-CACUAuccGACGCUg- -3'
miRNA:   3'- -AGCCG-----CGCGACGcGUGAU---UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 104562 0.69 0.718068
Target:  5'- uUCGG-GCGCUGCGCAUacguACuACUUGu -3'
miRNA:   3'- -AGCCgCGCGACGCGUGauu-UG-UGGAC- -5'
21190 5' -55.9 NC_004778.3 + 124281 0.69 0.73515
Target:  5'- cUCGGCGCGCUucaagaaugcugaaGCGCG----GCGCCg- -3'
miRNA:   3'- -AGCCGCGCGA--------------CGCGUgauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 125972 0.68 0.748034
Target:  5'- gCGGCGgaGCUGCaGCGCaUGAAgGCCg- -3'
miRNA:   3'- aGCCGCg-CGACG-CGUG-AUUUgUGGac -5'
21190 5' -55.9 NC_004778.3 + 81972 0.68 0.748034
Target:  5'- aUCGGUGuCGCggucguugacGCGCACgucuGACACUUGc -3'
miRNA:   3'- -AGCCGC-GCGa---------CGCGUGau--UUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 17408 0.68 0.786465
Target:  5'- -gGGCGCGCUGgGCAacgauUACCg- -3'
miRNA:   3'- agCCGCGCGACgCGUgauuuGUGGac -5'
21190 5' -55.9 NC_004778.3 + 110876 0.68 0.77705
Target:  5'- -aGGCGCGUguacaGCGaacuGCUGgccAGCGCCUGg -3'
miRNA:   3'- agCCGCGCGa----CGCg---UGAU---UUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 118948 0.68 0.77705
Target:  5'- uUCGGCGUug-GCGCACaccGACGCCa- -3'
miRNA:   3'- -AGCCGCGcgaCGCGUGau-UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 91343 0.68 0.77705
Target:  5'- gCGuGCGCGCUaGCGUGCUGuugcgcgucGCGCCg- -3'
miRNA:   3'- aGC-CGCGCGA-CGCGUGAUu--------UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 112341 0.68 0.7675
Target:  5'- -aGGCGCGCcGCGCGCacagcAACACg-- -3'
miRNA:   3'- agCCGCGCGaCGCGUGau---UUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 97296 0.68 0.748034
Target:  5'- gUGGC-CGCgGCGCAUUgGAGCGCCg- -3'
miRNA:   3'- aGCCGcGCGaCGCGUGA-UUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 100693 0.68 0.747049
Target:  5'- cUCGGCgcuguuuGCGCgUGCGCGaUGAACGCgUGu -3'
miRNA:   3'- -AGCCG-------CGCG-ACGCGUgAUUUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 111596 0.68 0.786465
Target:  5'- aCGGCGCGCgGUGuUACgc-GCGCCg- -3'
miRNA:   3'- aGCCGCGCGaCGC-GUGauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 99397 0.68 0.786465
Target:  5'- aCGGCGCGuUUGCGUucACUAcuGACgAUCUGu -3'
miRNA:   3'- aGCCGCGC-GACGCG--UGAU--UUG-UGGAC- -5'
21190 5' -55.9 NC_004778.3 + 7838 0.67 0.81381
Target:  5'- aCcGCGCGCUGCagcagaacccGCGCcuuAACACCUa -3'
miRNA:   3'- aGcCGCGCGACG----------CGUGau-UUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 9511 0.67 0.802136
Target:  5'- gCGGCGgaauaucgaugcccUGCUcGCGCACUAgcuuauacGACACCa- -3'
miRNA:   3'- aGCCGC--------------GCGA-CGCGUGAU--------UUGUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.