miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 5371 0.67 0.795737
Target:  5'- aUCaGCGCGCcGUGCAuCUgcacGAGCACUUGc -3'
miRNA:   3'- -AGcCGCGCGaCGCGU-GA----UUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 9511 0.67 0.802136
Target:  5'- gCGGCGgaauaucgaugcccUGCUcGCGCACUAgcuuauacGACACCa- -3'
miRNA:   3'- aGCCGC--------------GCGA-CGCGUGAU--------UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 32455 0.67 0.804855
Target:  5'- gCGGCGCagccGCUGCGUgucgcCUuuGCACCa- -3'
miRNA:   3'- aGCCGCG----CGACGCGu----GAuuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 86362 0.67 0.812922
Target:  5'- aUCGGCGCGaccccaagcacCUGCaGCGCcuuauccaacuuaUGAACGCCg- -3'
miRNA:   3'- -AGCCGCGC-----------GACG-CGUG-------------AUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 43136 0.67 0.81381
Target:  5'- aCGGCGcCGCgGCGCGCcgcacguuuuUGAACGCg-- -3'
miRNA:   3'- aGCCGC-GCGaCGCGUG----------AUUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 90868 0.67 0.81381
Target:  5'- gUGGaCGCGUUGCGCggcauACUGucguACGCCa- -3'
miRNA:   3'- aGCC-GCGCGACGCG-----UGAUu---UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 83857 0.67 0.81381
Target:  5'- -aGGCGCGCcagGCGCuggagGAGCGCUa- -3'
miRNA:   3'- agCCGCGCGa--CGCGuga--UUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 11017 0.67 0.81381
Target:  5'- -aGGCGCGCcGUGCAacccGCACCc- -3'
miRNA:   3'- agCCGCGCGaCGCGUgauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 7838 0.67 0.81381
Target:  5'- aCcGCGCGCUGCagcagaacccGCGCcuuAACACCUa -3'
miRNA:   3'- aGcCGCGCGACG----------CGUGau-UUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 38355 0.67 0.81381
Target:  5'- gUCGcGCGCGCUaGCGCGCau--UGCCa- -3'
miRNA:   3'- -AGC-CGCGCGA-CGCGUGauuuGUGGac -5'
21190 5' -55.9 NC_004778.3 + 91091 0.67 0.81381
Target:  5'- --uGCGCGCUaGCGCGCgcGACgACCg- -3'
miRNA:   3'- agcCGCGCGA-CGCGUGauUUG-UGGac -5'
21190 5' -55.9 NC_004778.3 + 124892 0.67 0.814697
Target:  5'- aCaGCGCGCUGgGCGCcgugauagauuuaacGAACACCa- -3'
miRNA:   3'- aGcCGCGCGACgCGUGa--------------UUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 96502 0.67 0.817345
Target:  5'- gCGGCGUuguacgcccccaaacGCggGCGCAaaauggGAGCGCCUGc -3'
miRNA:   3'- aGCCGCG---------------CGa-CGCGUga----UUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 64852 0.67 0.822594
Target:  5'- gUCGGCGCaCUGCGcCACacaugcuCACCg- -3'
miRNA:   3'- -AGCCGCGcGACGC-GUGauuu---GUGGac -5'
21190 5' -55.9 NC_004778.3 + 81460 0.67 0.822594
Target:  5'- --uGCGCGCgUGCGCGCguacuGGCGCgUGc -3'
miRNA:   3'- agcCGCGCG-ACGCGUGau---UUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 81697 0.67 0.822594
Target:  5'- gUCGGCGUGUaUGCGCcacaagGCUu-GCGCCa- -3'
miRNA:   3'- -AGCCGCGCG-ACGCG------UGAuuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 82049 0.67 0.822594
Target:  5'- aCGcGCGCGCgUGCGaCACgucGCGCCc- -3'
miRNA:   3'- aGC-CGCGCG-ACGC-GUGauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 56477 0.67 0.822594
Target:  5'- cUCGGaCGaaguggagGUUGCGC-CUGAGCACCg- -3'
miRNA:   3'- -AGCC-GCg-------CGACGCGuGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 49393 0.67 0.822594
Target:  5'- cCGGCcaGCGCcGCGUACUcgguauACugCUGa -3'
miRNA:   3'- aGCCG--CGCGaCGCGUGAuu----UGugGAC- -5'
21190 5' -55.9 NC_004778.3 + 117675 0.67 0.822594
Target:  5'- aUGGCGUGCUGCuguGCGCcgUGGACcgGCCg- -3'
miRNA:   3'- aGCCGCGCGACG---CGUG--AUUUG--UGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.