miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 63025 0.67 0.822594
Target:  5'- -aGGUcgGCGCUGaCGCAUUAAaauguACACUUGc -3'
miRNA:   3'- agCCG--CGCGAC-GCGUGAUU-----UGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 64852 0.67 0.822594
Target:  5'- gUCGGCGCaCUGCGcCACacaugcuCACCg- -3'
miRNA:   3'- -AGCCGCGcGACGC-GUGauuu---GUGGac -5'
21190 5' -55.9 NC_004778.3 + 81460 0.67 0.822594
Target:  5'- --uGCGCGCgUGCGCGCguacuGGCGCgUGc -3'
miRNA:   3'- agcCGCGCG-ACGCGUGau---UUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 81697 0.67 0.822594
Target:  5'- gUCGGCGUGUaUGCGCcacaagGCUu-GCGCCa- -3'
miRNA:   3'- -AGCCGCGCG-ACGCG------UGAuuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 95793 0.67 0.826059
Target:  5'- cCGGcCGCGCUGCGCcccguggauucuuuCUAAACaacgACCg- -3'
miRNA:   3'- aGCC-GCGCGACGCGu-------------GAUUUG----UGGac -5'
21190 5' -55.9 NC_004778.3 + 34315 0.67 0.828637
Target:  5'- cCGGCGCguGCUggaacuggugcaggGCGUGCUcGACACCa- -3'
miRNA:   3'- aGCCGCG--CGA--------------CGCGUGAuUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 23993 0.67 0.828637
Target:  5'- aUCGGC-CGCUGCGUgaccguuaagggucACUAu-CGCCUc -3'
miRNA:   3'- -AGCCGcGCGACGCG--------------UGAUuuGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 34420 0.67 0.831199
Target:  5'- cCGGCaGCGCgGCGUGCccguACugCUGu -3'
miRNA:   3'- aGCCG-CGCGaCGCGUGauu-UGugGAC- -5'
21190 5' -55.9 NC_004778.3 + 121900 0.67 0.839616
Target:  5'- --cGCGUGCUGgGCGCUcuGAGCACa-- -3'
miRNA:   3'- agcCGCGCGACgCGUGA--UUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 94845 0.67 0.839616
Target:  5'- cCGGUGgGUUGCGCGCcgcacGGACACa-- -3'
miRNA:   3'- aGCCGCgCGACGCGUGa----UUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 53167 0.67 0.839616
Target:  5'- aCGGCGCGCgGCGUuuCUAccuuuAACAgCCUu -3'
miRNA:   3'- aGCCGCGCGaCGCGu-GAU-----UUGU-GGAc -5'
21190 5' -55.9 NC_004778.3 + 59470 0.66 0.855855
Target:  5'- gCGGCGgGCgcGCGCAUUcgGUACCUa -3'
miRNA:   3'- aGCCGCgCGa-CGCGUGAuuUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 17106 0.66 0.862891
Target:  5'- cUGuGCGCGCgGCGCGcCUAccguggcAACGCCg- -3'
miRNA:   3'- aGC-CGCGCGaCGCGU-GAU-------UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 109638 0.66 0.863662
Target:  5'- -aGGUcgGCGCUGaCGCACguuaaagauAGCACUUGu -3'
miRNA:   3'- agCCG--CGCGAC-GCGUGau-------UUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 33089 0.66 0.871253
Target:  5'- gCGGCcCGCUGcCGCGCU--ACACgUa -3'
miRNA:   3'- aGCCGcGCGAC-GCGUGAuuUGUGgAc -5'
21190 5' -55.9 NC_004778.3 + 9013 0.66 0.871253
Target:  5'- gCGGCGgGCUGCauuuguCGC-AGGCGCCg- -3'
miRNA:   3'- aGCCGCgCGACGc-----GUGaUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 91590 0.66 0.871253
Target:  5'- gUCuGCGCG-UGCGCGucgaUAAGCACCa- -3'
miRNA:   3'- -AGcCGCGCgACGCGUg---AUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 11638 0.66 0.871253
Target:  5'- cUGGUGCGCcgcuUGCGCuugUUGGACACUa- -3'
miRNA:   3'- aGCCGCGCG----ACGCGu--GAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 115082 0.66 0.878622
Target:  5'- gUCGcGCGCGUUGCaGCGCauuucGAAcCGCCUc -3'
miRNA:   3'- -AGC-CGCGCGACG-CGUGa----UUU-GUGGAc -5'
21190 5' -55.9 NC_004778.3 + 58379 0.66 0.878622
Target:  5'- -aGGC-CGCUGUGCagcgGCUGGACGCg-- -3'
miRNA:   3'- agCCGcGCGACGCG----UGAUUUGUGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.