miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 126938 0.71 0.625069
Target:  5'- uUCGGCcaCGCUGCGCucgaauggguGCUuGACACCg- -3'
miRNA:   3'- -AGCCGc-GCGACGCG----------UGAuUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 110104 0.71 0.625069
Target:  5'- aCGGCGUGC-GCGC-C-GAGCGCUUGg -3'
miRNA:   3'- aGCCGCGCGaCGCGuGaUUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 67807 0.71 0.614648
Target:  5'- gUUGGCGCGCgcugGCuGCGCggcgccAAACGCUUGc -3'
miRNA:   3'- -AGCCGCGCGa---CG-CGUGa-----UUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 22986 0.71 0.614648
Target:  5'- uUUGcGCGCGCaGCGCGCUcAGCGCgUUGg -3'
miRNA:   3'- -AGC-CGCGCGaCGCGUGAuUUGUG-GAC- -5'
21190 5' -55.9 NC_004778.3 + 108351 0.71 0.614648
Target:  5'- cUCcGCGgGCUGCaccGCGCU-GACGCCUGu -3'
miRNA:   3'- -AGcCGCgCGACG---CGUGAuUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 95004 0.71 0.614648
Target:  5'- cCGcGCGCGCcGUGCGCcGAcgggcagguGCGCCUGg -3'
miRNA:   3'- aGC-CGCGCGaCGCGUGaUU---------UGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 63694 0.71 0.573176
Target:  5'- cCGGCuCGCUGCGC-C-AAACGCCg- -3'
miRNA:   3'- aGCCGcGCGACGCGuGaUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 98194 0.72 0.548595
Target:  5'- cUCGGCGCGaggUGCGCGCgccacggacagcAACGCCUc -3'
miRNA:   3'- -AGCCGCGCg--ACGCGUGau----------UUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 108728 0.72 0.5425
Target:  5'- gUGGCaGCGCUGCGuCGCg--GCACCa- -3'
miRNA:   3'- aGCCG-CGCGACGC-GUGauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 119918 0.72 0.538449
Target:  5'- aCGGCGCGCaaaucgucgauacGCGCGCgguACGCCUc -3'
miRNA:   3'- aGCCGCGCGa------------CGCGUGauuUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 34441 0.72 0.522352
Target:  5'- gUCGGCGCaCgGCGCGCgcggaaaGAACGCCUc -3'
miRNA:   3'- -AGCCGCGcGaCGCGUGa------UUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 21892 0.73 0.5025
Target:  5'- aCGGCGCGCUGCucuGCGgUAagcGACGCgUGc -3'
miRNA:   3'- aGCCGCGCGACG---CGUgAU---UUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 61375 0.73 0.5025
Target:  5'- cCGGCGCGU--CGuCGCUGAGCGCCa- -3'
miRNA:   3'- aGCCGCGCGacGC-GUGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 118743 0.73 0.482985
Target:  5'- cUCGGCGCgGCgGCGCACaccAACACgUGc -3'
miRNA:   3'- -AGCCGCG-CGaCGCGUGau-UUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 53730 0.73 0.473365
Target:  5'- aUGcGCGCGCUGCGCGCaaauuAUACCg- -3'
miRNA:   3'- aGC-CGCGCGACGCGUGauu--UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 86310 0.73 0.463842
Target:  5'- gCGGCGCGCcGCgGCGCcgucgAAGCGCUUGc -3'
miRNA:   3'- aGCCGCGCGaCG-CGUGa----UUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 36549 0.73 0.463842
Target:  5'- cCGGCuCGCUGCGgcucaaGCUGGACGCCg- -3'
miRNA:   3'- aGCCGcGCGACGCg-----UGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 38146 0.74 0.445103
Target:  5'- -aGGCcCGCUGCGcCGCUcGACACCUc -3'
miRNA:   3'- agCCGcGCGACGC-GUGAuUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 124082 0.74 0.426796
Target:  5'- aCGGCGCGCugaUGCGCGCgguuGGCgGCCUc -3'
miRNA:   3'- aGCCGCGCG---ACGCGUGau--UUG-UGGAc -5'
21190 5' -55.9 NC_004778.3 + 52065 0.74 0.426796
Target:  5'- cCGGCGCG-UGCGCAUU--GCACCa- -3'
miRNA:   3'- aGCCGCGCgACGCGUGAuuUGUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.