miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 97296 0.68 0.748034
Target:  5'- gUGGC-CGCgGCGCAUUgGAGCGCCg- -3'
miRNA:   3'- aGCCGcGCGaCGCGUGA-UUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 98194 0.72 0.548595
Target:  5'- cUCGGCGCGaggUGCGCGCgccacggacagcAACGCCUc -3'
miRNA:   3'- -AGCCGCGCg--ACGCGUGau----------UUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 99397 0.68 0.786465
Target:  5'- aCGGCGCGuUUGCGUucACUAcuGACgAUCUGu -3'
miRNA:   3'- aGCCGCGC-GACGCG--UGAU--UUG-UGGAC- -5'
21190 5' -55.9 NC_004778.3 + 100693 0.68 0.747049
Target:  5'- cUCGGCgcuguuuGCGCgUGCGCGaUGAACGCgUGu -3'
miRNA:   3'- -AGCCG-------CGCG-ACGCGUgAUUUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 103902 0.66 0.885762
Target:  5'- cUGGCGCGCgaUGCGCGaUAAGCGgUa- -3'
miRNA:   3'- aGCCGCGCG--ACGCGUgAUUUGUgGac -5'
21190 5' -55.9 NC_004778.3 + 104468 0.7 0.656333
Target:  5'- aUCaGCuGCGCUGCGUGC--AACACCUc -3'
miRNA:   3'- -AGcCG-CGCGACGCGUGauUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 104562 0.69 0.718068
Target:  5'- uUCGG-GCGCUGCGCAUacguACuACUUGu -3'
miRNA:   3'- -AGCCgCGCGACGCGUGauu-UG-UGGAC- -5'
21190 5' -55.9 NC_004778.3 + 106458 0.74 0.417811
Target:  5'- cUGaGCGCGCUGCGCGCgcaAAACGCg-- -3'
miRNA:   3'- aGC-CGCGCGACGCGUGa--UUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 108351 0.71 0.614648
Target:  5'- cUCcGCGgGCUGCaccGCGCU-GACGCCUGu -3'
miRNA:   3'- -AGcCGCgCGACG---CGUGAuUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 108728 0.72 0.5425
Target:  5'- gUGGCaGCGCUGCGuCGCg--GCACCa- -3'
miRNA:   3'- aGCCG-CGCGACGC-GUGauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 109482 0.66 0.885762
Target:  5'- -aGGUcgGCGCUGaCGCACgu--CACUUGu -3'
miRNA:   3'- agCCG--CGCGAC-GCGUGauuuGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 109638 0.66 0.863662
Target:  5'- -aGGUcgGCGCUGaCGCACguuaaagauAGCACUUGu -3'
miRNA:   3'- agCCG--CGCGAC-GCGUGau-------UUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 110104 0.71 0.625069
Target:  5'- aCGGCGUGC-GCGC-C-GAGCGCUUGg -3'
miRNA:   3'- aGCCGCGCGaCGCGuGaUUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 110876 0.68 0.77705
Target:  5'- -aGGCGCGUguacaGCGaacuGCUGgccAGCGCCUGg -3'
miRNA:   3'- agCCGCGCGa----CGCg---UGAU---UUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 111596 0.68 0.786465
Target:  5'- aCGGCGCGCgGUGuUACgc-GCGCCg- -3'
miRNA:   3'- aGCCGCGCGaCGC-GUGauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 112341 0.68 0.7675
Target:  5'- -aGGCGCGCcGCGCGCacagcAACACg-- -3'
miRNA:   3'- agCCGCGCGaCGCGUGau---UUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 115082 0.66 0.878622
Target:  5'- gUCGcGCGCGUUGCaGCGCauuucGAAcCGCCUc -3'
miRNA:   3'- -AGC-CGCGCGACG-CGUGa----UUU-GUGGAc -5'
21190 5' -55.9 NC_004778.3 + 117675 0.67 0.822594
Target:  5'- aUGGCGUGCUGCuguGCGCcgUGGACcgGCCg- -3'
miRNA:   3'- aGCCGCGCGACG---CGUG--AUUUG--UGGac -5'
21190 5' -55.9 NC_004778.3 + 118743 0.73 0.482985
Target:  5'- cUCGGCGCgGCgGCGCACaccAACACgUGc -3'
miRNA:   3'- -AGCCGCG-CGaCGCGUGau-UUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 118864 0.66 0.885762
Target:  5'- aCGGCGCGCgcaCGCaACUGAGgACaaaUGc -3'
miRNA:   3'- aGCCGCGCGac-GCG-UGAUUUgUGg--AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.