Results 101 - 111 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 118948 | 0.68 | 0.77705 |
Target: 5'- uUCGGCGUug-GCGCACaccGACGCCa- -3' miRNA: 3'- -AGCCGCGcgaCGCGUGau-UUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 119198 | 1.08 | 0.002547 |
Target: 5'- aUCGGCGCGCUGCGCACUAAACACCUGc -3' miRNA: 3'- -AGCCGCGCGACGCGUGAUUUGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 119918 | 0.72 | 0.538449 |
Target: 5'- aCGGCGCGCaaaucgucgauacGCGCGCgguACGCCUc -3' miRNA: 3'- aGCCGCGCGa------------CGCGUGauuUGUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 121900 | 0.67 | 0.839616 |
Target: 5'- --cGCGUGCUGgGCGCUcuGAGCACa-- -3' miRNA: 3'- agcCGCGCGACgCGUGA--UUUGUGgac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 122020 | 0.67 | 0.822594 |
Target: 5'- gUGGCGCcgacaagcaGCUGCGU-UUAAACGCCg- -3' miRNA: 3'- aGCCGCG---------CGACGCGuGAUUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 124082 | 0.74 | 0.426796 |
Target: 5'- aCGGCGCGCugaUGCGCGCgguuGGCgGCCUc -3' miRNA: 3'- aGCCGCGCG---ACGCGUGau--UUG-UGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 124281 | 0.69 | 0.73515 |
Target: 5'- cUCGGCGCGCUucaagaaugcugaaGCGCG----GCGCCg- -3' miRNA: 3'- -AGCCGCGCGA--------------CGCGUgauuUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 124892 | 0.67 | 0.814697 |
Target: 5'- aCaGCGCGCUGgGCGCcgugauagauuuaacGAACACCa- -3' miRNA: 3'- aGcCGCGCGACgCGUGa--------------UUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 125972 | 0.68 | 0.748034 |
Target: 5'- gCGGCGgaGCUGCaGCGCaUGAAgGCCg- -3' miRNA: 3'- aGCCGCg-CGACG-CGUG-AUUUgUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 126938 | 0.71 | 0.625069 |
Target: 5'- uUCGGCcaCGCUGCGCucgaauggguGCUuGACACCg- -3' miRNA: 3'- -AGCCGc-GCGACGCG----------UGAuUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 128036 | 0.8 | 0.191272 |
Target: 5'- aUCGGCGCGCUGCuGCACUuuuacaggauGGAUGCCa- -3' miRNA: 3'- -AGCCGCGCGACG-CGUGA----------UUUGUGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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