miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 59470 0.66 0.855855
Target:  5'- gCGGCGgGCgcGCGCAUUcgGUACCUa -3'
miRNA:   3'- aGCCGCgCGa-CGCGUGAuuUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 58379 0.66 0.878622
Target:  5'- -aGGC-CGCUGUGCagcgGCUGGACGCg-- -3'
miRNA:   3'- agCCGcGCGACGCG----UGAUUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 57361 0.7 0.669839
Target:  5'- aCGGCGaaaCGCUGCGCACgcugcaacaguuugcGCGCCa- -3'
miRNA:   3'- aGCCGC---GCGACGCGUGauu------------UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 56477 0.67 0.822594
Target:  5'- cUCGGaCGaaguggagGUUGCGC-CUGAGCACCg- -3'
miRNA:   3'- -AGCC-GCg-------CGACGCGuGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 53730 0.73 0.473365
Target:  5'- aUGcGCGCGCUGCGCGCaaauuAUACCg- -3'
miRNA:   3'- aGC-CGCGCGACGCGUGauu--UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 53167 0.67 0.839616
Target:  5'- aCGGCGCGCgGCGUuuCUAccuuuAACAgCCUu -3'
miRNA:   3'- aGCCGCGCGaCGCGu-GAU-----UUGU-GGAc -5'
21190 5' -55.9 NC_004778.3 + 52065 0.74 0.426796
Target:  5'- cCGGCGCG-UGCGCAUU--GCACCa- -3'
miRNA:   3'- aGCCGCGCgACGCGUGAuuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 51716 0.69 0.697693
Target:  5'- cUCGGUGCGCgcggGUGUGCUGAggucguagauccGCACgUGc -3'
miRNA:   3'- -AGCCGCGCGa---CGCGUGAUU------------UGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 51141 0.7 0.656333
Target:  5'- cCGGCGCGCgGCugaaGCACUuuGcCGCCUu -3'
miRNA:   3'- aGCCGCGCGaCG----CGUGAuuU-GUGGAc -5'
21190 5' -55.9 NC_004778.3 + 49854 0.7 0.666726
Target:  5'- -gGGCGCGCuUGCGgGCUGcaucguCGCUUGg -3'
miRNA:   3'- agCCGCGCG-ACGCgUGAUuu----GUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 49393 0.67 0.822594
Target:  5'- cCGGCcaGCGCcGCGUACUcgguauACugCUGa -3'
miRNA:   3'- aGCCG--CGCGaCGCGUGAuu----UGugGAC- -5'
21190 5' -55.9 NC_004778.3 + 43136 0.67 0.81381
Target:  5'- aCGGCGcCGCgGCGCGCcgcacguuuuUGAACGCg-- -3'
miRNA:   3'- aGCCGC-GCGaCGCGUG----------AUUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 43110 0.69 0.738138
Target:  5'- cCGGCG-GCUGCuGCGC-AAGCGCUUc -3'
miRNA:   3'- aGCCGCgCGACG-CGUGaUUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 38887 0.69 0.707914
Target:  5'- cUCGGCggcgaGCGCUGC-CACUAuccGACGCUg- -3'
miRNA:   3'- -AGCCG-----CGCGACGcGUGAU---UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 38355 0.67 0.81381
Target:  5'- gUCGcGCGCGCUaGCGCGCau--UGCCa- -3'
miRNA:   3'- -AGC-CGCGCGA-CGCGUGauuuGUGGac -5'
21190 5' -55.9 NC_004778.3 + 38146 0.74 0.445103
Target:  5'- -aGGCcCGCUGCGcCGCUcGACACCUc -3'
miRNA:   3'- agCCGcGCGACGC-GUGAuUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 36549 0.73 0.463842
Target:  5'- cCGGCuCGCUGCGgcucaaGCUGGACGCCg- -3'
miRNA:   3'- aGCCGcGCGACGCg-----UGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 34453 0.66 0.878622
Target:  5'- -gGGCaCGCUGCGCGuCgagGAgcGCACCg- -3'
miRNA:   3'- agCCGcGCGACGCGU-Ga--UU--UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 34441 0.72 0.522352
Target:  5'- gUCGGCGCaCgGCGCGCgcggaaaGAACGCCUc -3'
miRNA:   3'- -AGCCGCGcGaCGCGUGa------UUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 34420 0.67 0.831199
Target:  5'- cCGGCaGCGCgGCGUGCccguACugCUGu -3'
miRNA:   3'- aGCCG-CGCGaCGCGUGauu-UGugGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.