Results 81 - 100 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 34315 | 0.67 | 0.828637 |
Target: 5'- cCGGCGCguGCUggaacuggugcaggGCGUGCUcGACACCa- -3' miRNA: 3'- aGCCGCG--CGA--------------CGCGUGAuUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 33831 | 0.74 | 0.417811 |
Target: 5'- gCGGCaGC-CUGCGCGCUcAACGCCg- -3' miRNA: 3'- aGCCG-CGcGACGCGUGAuUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 33670 | 0.81 | 0.177154 |
Target: 5'- cCGGCGCGCUGcCGCGCggauAGCGCCc- -3' miRNA: 3'- aGCCGCGCGAC-GCGUGau--UUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 33089 | 0.66 | 0.871253 |
Target: 5'- gCGGCcCGCUGcCGCGCU--ACACgUa -3' miRNA: 3'- aGCCGcGCGAC-GCGUGAuuUGUGgAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 32455 | 0.67 | 0.804855 |
Target: 5'- gCGGCGCagccGCUGCGUgucgcCUuuGCACCa- -3' miRNA: 3'- aGCCGCG----CGACGCGu----GAuuUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 29337 | 0.74 | 0.417811 |
Target: 5'- gCGGCGCGCgcugggGUGCGCcAAGCGgCUGu -3' miRNA: 3'- aGCCGCGCGa-----CGCGUGaUUUGUgGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 25885 | 0.7 | 0.676055 |
Target: 5'- cCGGCGCGaccguggGCGCuggcacgcucgucGCUGGGCGCUUGc -3' miRNA: 3'- aGCCGCGCga-----CGCG-------------UGAUUUGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 23993 | 0.67 | 0.828637 |
Target: 5'- aUCGGC-CGCUGCGUgaccguuaagggucACUAu-CGCCUc -3' miRNA: 3'- -AGCCGcGCGACGCG--------------UGAUuuGUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 22986 | 0.71 | 0.614648 |
Target: 5'- uUUGcGCGCGCaGCGCGCUcAGCGCgUUGg -3' miRNA: 3'- -AGC-CGCGCGaCGCGUGAuUUGUG-GAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 21892 | 0.73 | 0.5025 |
Target: 5'- aCGGCGCGCUGCucuGCGgUAagcGACGCgUGc -3' miRNA: 3'- aGCCGCGCGACG---CGUgAU---UUGUGgAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 21249 | 0.76 | 0.32703 |
Target: 5'- -aGGCGCGUUGCGCAUUAcauACAUUUGc -3' miRNA: 3'- agCCGCGCGACGCGUGAUu--UGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 19127 | 0.69 | 0.707914 |
Target: 5'- -gGGCGCGCgagcgGCGCugUuucGAACACg-- -3' miRNA: 3'- agCCGCGCGa----CGCGugA---UUUGUGgac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 17844 | 0.66 | 0.885059 |
Target: 5'- cUCGGCGCGCguaacaccGCGCGCcguccgUGAcuuuggcGCGCCc- -3' miRNA: 3'- -AGCCGCGCGa-------CGCGUG------AUU-------UGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 17408 | 0.68 | 0.786465 |
Target: 5'- -gGGCGCGCUGgGCAacgauUACCg- -3' miRNA: 3'- agCCGCGCGACgCGUgauuuGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 17106 | 0.66 | 0.862891 |
Target: 5'- cUGuGCGCGCgGCGCGcCUAccguggcAACGCCg- -3' miRNA: 3'- aGC-CGCGCGaCGCGU-GAU-------UUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 15703 | 0.78 | 0.245622 |
Target: 5'- aUGGCGCGCUGCuGCGCgagauGCGCCa- -3' miRNA: 3'- aGCCGCGCGACG-CGUGauu--UGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 12134 | 0.7 | 0.64592 |
Target: 5'- uUCGGUGaCGgUGCGCACcuuguuGCACCg- -3' miRNA: 3'- -AGCCGC-GCgACGCGUGauu---UGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 11638 | 0.66 | 0.871253 |
Target: 5'- cUGGUGCGCcgcuUGCGCuugUUGGACACUa- -3' miRNA: 3'- aGCCGCGCG----ACGCGu--GAUUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 11017 | 0.67 | 0.81381 |
Target: 5'- -aGGCGCGCcGUGCAacccGCACCc- -3' miRNA: 3'- agCCGCGCGaCGCGUgauuUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 10491 | 0.66 | 0.885762 |
Target: 5'- cUGGCGuCGgUGUGCGCc-AACGCCg- -3' miRNA: 3'- aGCCGC-GCgACGCGUGauUUGUGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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