Results 101 - 111 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 9905 | 0.66 | 0.885762 |
Target: 5'- -gGGCGCGgUGUGCGCUuuaguGAAaACCg- -3' miRNA: 3'- agCCGCGCgACGCGUGA-----UUUgUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 9511 | 0.67 | 0.802136 |
Target: 5'- gCGGCGgaauaucgaugcccUGCUcGCGCACUAgcuuauacGACACCa- -3' miRNA: 3'- aGCCGC--------------GCGA-CGCGUGAU--------UUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 9013 | 0.66 | 0.871253 |
Target: 5'- gCGGCGgGCUGCauuuguCGC-AGGCGCCg- -3' miRNA: 3'- aGCCGCgCGACGc-----GUGaUUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 8801 | 0.67 | 0.822594 |
Target: 5'- gCGGCGagGCggcggGCGCGCUcagcgaauGGCGCCUa -3' miRNA: 3'- aGCCGCg-CGa----CGCGUGAu-------UUGUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 7838 | 0.67 | 0.81381 |
Target: 5'- aCcGCGCGCUGCagcagaacccGCGCcuuAACACCUa -3' miRNA: 3'- aGcCGCGCGACG----------CGUGau-UUGUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 7153 | 0.77 | 0.290873 |
Target: 5'- cUCGGCGgGCgGCGCGCcGAGCACUa- -3' miRNA: 3'- -AGCCGCgCGaCGCGUGaUUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 5371 | 0.67 | 0.795737 |
Target: 5'- aUCaGCGCGCcGUGCAuCUgcacGAGCACUUGc -3' miRNA: 3'- -AGcCGCGCGaCGCGU-GA----UUUGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 3229 | 0.66 | 0.885762 |
Target: 5'- gUGGCGCGCcGUGauCAC-GGACACCa- -3' miRNA: 3'- aGCCGCGCGaCGC--GUGaUUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 2194 | 0.69 | 0.718068 |
Target: 5'- -gGGaGCGCUggauaGCGCGCUAGugGCCa- -3' miRNA: 3'- agCCgCGCGA-----CGCGUGAUUugUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 733 | 0.66 | 0.878622 |
Target: 5'- --aGCGCaCUGUGCACgu--CACCUGc -3' miRNA: 3'- agcCGCGcGACGCGUGauuuGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 140 | 0.7 | 0.67709 |
Target: 5'- gCGGCGCGUccgcgGCGUAC--AGCGCCa- -3' miRNA: 3'- aGCCGCGCGa----CGCGUGauUUGUGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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