miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 125972 0.68 0.748034
Target:  5'- gCGGCGgaGCUGCaGCGCaUGAAgGCCg- -3'
miRNA:   3'- aGCCGCg-CGACG-CGUG-AUUUgUGGac -5'
21190 5' -55.9 NC_004778.3 + 43110 0.69 0.738138
Target:  5'- cCGGCG-GCUGCuGCGC-AAGCGCUUc -3'
miRNA:   3'- aGCCGCgCGACG-CGUGaUUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 124281 0.69 0.73515
Target:  5'- cUCGGCGCGCUucaagaaugcugaaGCGCG----GCGCCg- -3'
miRNA:   3'- -AGCCGCGCGA--------------CGCGUgauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 19127 0.69 0.707914
Target:  5'- -gGGCGCGCgagcgGCGCugUuucGAACACg-- -3'
miRNA:   3'- agCCGCGCGa----CGCGugA---UUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 25885 0.7 0.676055
Target:  5'- cCGGCGCGaccguggGCGCuggcacgcucgucGCUGGGCGCUUGc -3'
miRNA:   3'- aGCCGCGCga-----CGCG-------------UGAUUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 57361 0.7 0.669839
Target:  5'- aCGGCGaaaCGCUGCGCACgcugcaacaguuugcGCGCCa- -3'
miRNA:   3'- aGCCGC---GCGACGCGUGauu------------UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 49854 0.7 0.666726
Target:  5'- -gGGCGCGCuUGCGgGCUGcaucguCGCUUGg -3'
miRNA:   3'- agCCGCGCG-ACGCgUGAUuu----GUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 104468 0.7 0.656333
Target:  5'- aUCaGCuGCGCUGCGUGC--AACACCUc -3'
miRNA:   3'- -AGcCG-CGCGACGCGUGauUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 51141 0.7 0.656333
Target:  5'- cCGGCGCGCgGCugaaGCACUuuGcCGCCUu -3'
miRNA:   3'- aGCCGCGCGaCG----CGUGAuuU-GUGGAc -5'
21190 5' -55.9 NC_004778.3 + 110104 0.71 0.625069
Target:  5'- aCGGCGUGC-GCGC-C-GAGCGCUUGg -3'
miRNA:   3'- aGCCGCGCGaCGCGuGaUUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 126938 0.71 0.625069
Target:  5'- uUCGGCcaCGCUGCGCucgaauggguGCUuGACACCg- -3'
miRNA:   3'- -AGCCGc-GCGACGCG----------UGAuUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 91590 0.66 0.871253
Target:  5'- gUCuGCGCG-UGCGCGucgaUAAGCACCa- -3'
miRNA:   3'- -AGcCGCGCgACGCGUg---AUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 11638 0.66 0.871253
Target:  5'- cUGGUGCGCcgcuUGCGCuugUUGGACACUa- -3'
miRNA:   3'- aGCCGCGCG----ACGCGu--GAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 733 0.66 0.878622
Target:  5'- --aGCGCaCUGUGCACgu--CACCUGc -3'
miRNA:   3'- agcCGCGcGACGCGUGauuuGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 58379 0.66 0.878622
Target:  5'- -aGGC-CGCUGUGCagcgGCUGGACGCg-- -3'
miRNA:   3'- agCCGcGCGACGCG----UGAUUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 115082 0.66 0.878622
Target:  5'- gUCGcGCGCGUUGCaGCGCauuucGAAcCGCCUc -3'
miRNA:   3'- -AGC-CGCGCGACG-CGUGa----UUU-GUGGAc -5'
21190 5' -55.9 NC_004778.3 + 65493 0.66 0.878622
Target:  5'- gUUGGUGCGCUucGCGUAUUcagucAGCACCc- -3'
miRNA:   3'- -AGCCGCGCGA--CGCGUGAu----UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 17844 0.66 0.885059
Target:  5'- cUCGGCGCGCguaacaccGCGCGCcguccgUGAcuuuggcGCGCCc- -3'
miRNA:   3'- -AGCCGCGCGa-------CGCGUG------AUU-------UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 109482 0.66 0.885762
Target:  5'- -aGGUcgGCGCUGaCGCACgu--CACUUGu -3'
miRNA:   3'- agCCG--CGCGAC-GCGUGauuuGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 119198 1.08 0.002547
Target:  5'- aUCGGCGCGCUGCGCACUAAACACCUGc -3'
miRNA:   3'- -AGCCGCGCGACGCGUGAUUUGUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.