miRNA display CGI


Results 101 - 111 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 7838 0.67 0.81381
Target:  5'- aCcGCGCGCUGCagcagaacccGCGCcuuAACACCUa -3'
miRNA:   3'- aGcCGCGCGACG----------CGUGau-UUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 11017 0.67 0.81381
Target:  5'- -aGGCGCGCcGUGCAacccGCACCc- -3'
miRNA:   3'- agCCGCGCGaCGCGUgauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 83857 0.67 0.81381
Target:  5'- -aGGCGCGCcagGCGCuggagGAGCGCUa- -3'
miRNA:   3'- agCCGCGCGa--CGCGuga--UUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 90868 0.67 0.81381
Target:  5'- gUGGaCGCGUUGCGCggcauACUGucguACGCCa- -3'
miRNA:   3'- aGCC-GCGCGACGCG-----UGAUu---UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 91091 0.67 0.81381
Target:  5'- --uGCGCGCUaGCGCGCgcGACgACCg- -3'
miRNA:   3'- agcCGCGCGA-CGCGUGauUUG-UGGac -5'
21190 5' -55.9 NC_004778.3 + 124892 0.67 0.814697
Target:  5'- aCaGCGCGCUGgGCGCcgugauagauuuaacGAACACCa- -3'
miRNA:   3'- aGcCGCGCGACgCGUGa--------------UUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 63025 0.67 0.822594
Target:  5'- -aGGUcgGCGCUGaCGCAUUAAaauguACACUUGc -3'
miRNA:   3'- agCCG--CGCGAC-GCGUGAUU-----UGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 64852 0.67 0.822594
Target:  5'- gUCGGCGCaCUGCGcCACacaugcuCACCg- -3'
miRNA:   3'- -AGCCGCGcGACGC-GUGauuu---GUGGac -5'
21190 5' -55.9 NC_004778.3 + 81460 0.67 0.822594
Target:  5'- --uGCGCGCgUGCGCGCguacuGGCGCgUGc -3'
miRNA:   3'- agcCGCGCG-ACGCGUGau---UUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 81697 0.67 0.822594
Target:  5'- gUCGGCGUGUaUGCGCcacaagGCUu-GCGCCa- -3'
miRNA:   3'- -AGCCGCGCG-ACGCG------UGAuuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 103902 0.66 0.885762
Target:  5'- cUGGCGCGCgaUGCGCGaUAAGCGgUa- -3'
miRNA:   3'- aGCCGCGCG--ACGCGUgAUUUGUgGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.